Results 101 - 120 of 430 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29458 | 3' | -65.5 | NC_006151.1 | + | 5923 | 0.72 | 0.228211 |
Target: 5'- cGGCgGC-CGGGGCCcGGa--GCCGGCCc -3' miRNA: 3'- -CCG-CGuGCCCCGGcCCgagCGGCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 102141 | 0.72 | 0.238766 |
Target: 5'- gGGCGCGcCGGGcuGCUGGaGCgcuUCGCCGAgCu -3' miRNA: 3'- -CCGCGU-GCCC--CGGCC-CG---AGCGGCUgG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 111858 | 0.72 | 0.223084 |
Target: 5'- gGGCGCuCGGGGUCGcaGGCcgucUCGCCGucGCUg -3' miRNA: 3'- -CCGCGuGCCCCGGC--CCG----AGCGGC--UGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 129106 | 0.72 | 0.238229 |
Target: 5'- uGCGCACGagcgccaGGGCCGaGGCgCGCUGggcGCCa -3' miRNA: 3'- cCGCGUGC-------CCCGGC-CCGaGCGGC---UGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 92659 | 0.72 | 0.22207 |
Target: 5'- aGGCGCucgcccugcugcCGGcGGCCGGggacgcgcGCUCGCCGcgcGCCg -3' miRNA: 3'- -CCGCGu-----------GCC-CCGGCC--------CGAGCGGC---UGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 74138 | 0.72 | 0.208286 |
Target: 5'- gGGUGCAgCGGGuGCCgGGGgUCGuCCGugCc -3' miRNA: 3'- -CCGCGU-GCCC-CGG-CCCgAGC-GGCugG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 57590 | 0.72 | 0.208286 |
Target: 5'- aGGCGCACGugaccaGGCCGGcCUCGgCCGcgGCCg -3' miRNA: 3'- -CCGCGUGCc-----CCGGCCcGAGC-GGC--UGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 28096 | 0.72 | 0.208286 |
Target: 5'- gGGCGUccucgaGCGGGGCgCGGcucCUCGUCGGCUc -3' miRNA: 3'- -CCGCG------UGCCCCG-GCCc--GAGCGGCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 68267 | 0.72 | 0.218054 |
Target: 5'- cGGCGacgguCGCGGcGCCGGGCgccaCGgCGGCCa -3' miRNA: 3'- -CCGC-----GUGCCcCGGCCCGa---GCgGCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 125242 | 0.72 | 0.218054 |
Target: 5'- cGGCGCucccccggcccgGCGGGGacgcCCGaGC-CGCCGGCCg -3' miRNA: 3'- -CCGCG------------UGCCCC----GGCcCGaGCGGCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 3383 | 0.72 | 0.220054 |
Target: 5'- aGGCG-GCGaGGGCCgccucggaGGGCcgcggcgugugggucUCGCCGGCCg -3' miRNA: 3'- -CCGCgUGC-CCCGG--------CCCG---------------AGCGGCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 46716 | 0.72 | 0.218054 |
Target: 5'- uGGUGCcucgGGGGCCGGG---GCCGGCCc -3' miRNA: 3'- -CCGCGug--CCCCGGCCCgagCGGCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 10561 | 0.72 | 0.233439 |
Target: 5'- cGGCGCccaaugGCGcGGCC-GGCUCGgCGGCCc -3' miRNA: 3'- -CCGCG------UGCcCCGGcCCGAGCgGCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 29473 | 0.72 | 0.208286 |
Target: 5'- gGGCGCGCcGGGagaggaaaGGGCgCGCUGGCCu -3' miRNA: 3'- -CCGCGUGcCCCgg------CCCGaGCGGCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 118880 | 0.72 | 0.233439 |
Target: 5'- cGGCgGCGCGGcGGCgaCGcGGC-CGCCGGCg -3' miRNA: 3'- -CCG-CGUGCC-CCG--GC-CCGaGCGGCUGg -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 57239 | 0.72 | 0.208286 |
Target: 5'- cGGCGCGCGcGGCCucGGCgucCGCgCGGCCc -3' miRNA: 3'- -CCGCGUGCcCCGGc-CCGa--GCG-GCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 31207 | 0.72 | 0.233439 |
Target: 5'- uGGCcCGCGuccaGGCCGGGCccccgGCCGGCCg -3' miRNA: 3'- -CCGcGUGCc---CCGGCCCGag---CGGCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 84429 | 0.72 | 0.226148 |
Target: 5'- cGGCGCGCGGcGGCgCGcGGCccauguccccccgCGCCaugGACCg -3' miRNA: 3'- -CCGCGUGCC-CCG-GC-CCGa------------GCGG---CUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 54663 | 0.72 | 0.228211 |
Target: 5'- uGGacgaGCACGaccuGGCCGGGCaccugcgcgUCGCCGGCa -3' miRNA: 3'- -CCg---CGUGCc---CCGGCCCG---------AGCGGCUGg -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 7018 | 0.71 | 0.244195 |
Target: 5'- cGGCcccCGCGGcGGCCaucucGGCUCGCCcgGGCCa -3' miRNA: 3'- -CCGc--GUGCC-CCGGc----CCGAGCGG--CUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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