Results 121 - 140 of 430 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29458 | 3' | -65.5 | NC_006151.1 | + | 27384 | 0.71 | 0.249726 |
Target: 5'- gGGCGagaacgGCGGGGagggcaCGGGCUCGUaccaguCGGCCc -3' miRNA: 3'- -CCGCg-----UGCCCCg-----GCCCGAGCG------GCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 6235 | 0.71 | 0.272887 |
Target: 5'- cGGCGC-CGGGaGCCcuGGCUgcCGCCGucgggGCCg -3' miRNA: 3'- -CCGCGuGCCC-CGGc-CCGA--GCGGC-----UGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 75639 | 0.71 | 0.249726 |
Target: 5'- gGGCuuGCcgucgucgGGGGCC-GGCUCGCCG-CCg -3' miRNA: 3'- -CCGcgUG--------CCCCGGcCCGAGCGGCuGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 106722 | 0.71 | 0.243648 |
Target: 5'- uGgGCACGGGcaugacguucaccGUcaCGGGCUCGCCG-CCg -3' miRNA: 3'- cCgCGUGCCC-------------CG--GCCCGAGCGGCuGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 22531 | 0.71 | 0.249726 |
Target: 5'- aGuCGgGCGGGGCCGGGUcaggCGgaGGCCa -3' miRNA: 3'- cC-GCgUGCCCCGGCCCGa---GCggCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 7018 | 0.71 | 0.244195 |
Target: 5'- cGGCcccCGCGGcGGCCaucucGGCUCGCCcgGGCCa -3' miRNA: 3'- -CCGc--GUGCC-CCGGc----CCGAGCGG--CUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 59360 | 0.71 | 0.244195 |
Target: 5'- cGCGCACGGGGCgccgCGcGGCcgUCGUCGcguCCa -3' miRNA: 3'- cCGCGUGCCCCG----GC-CCG--AGCGGCu--GG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 40567 | 0.71 | 0.261098 |
Target: 5'- cGGCG-GCGGcGGCCgcggcggaGGGCUCGgCGGCg -3' miRNA: 3'- -CCGCgUGCC-CCGG--------CCCGAGCgGCUGg -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 130963 | 0.71 | 0.26694 |
Target: 5'- gGGCGCG-GGGGCCGGuacC-CCGGCCg -3' miRNA: 3'- -CCGCGUgCCCCGGCCcgaGcGGCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 99720 | 0.71 | 0.26694 |
Target: 5'- aGGCGCcgACGa-GCgCGGcGCUCGUCGACCu -3' miRNA: 3'- -CCGCG--UGCccCG-GCC-CGAGCGGCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 3131 | 0.71 | 0.26694 |
Target: 5'- aGGCcggGCGCGGGGCgcccucggCGGGCUCGgCG-Ca -3' miRNA: 3'- -CCG---CGUGCCCCG--------GCCCGAGCgGCuGg -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 141461 | 0.71 | 0.249726 |
Target: 5'- gGGCGguCuGGaGCCGGGggCGCCGAguCCg -3' miRNA: 3'- -CCGCguGcCC-CGGCCCgaGCGGCU--GG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 101766 | 0.71 | 0.260519 |
Target: 5'- cGCGCcgccgacGCGGGGCCccgGGGCcaucccguccUCGCCGucGCCc -3' miRNA: 3'- cCGCG-------UGCCCCGG---CCCG----------AGCGGC--UGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 71977 | 0.71 | 0.261098 |
Target: 5'- cGGUGCgGCGGGGgCagcuGGUagCGCCGGCCg -3' miRNA: 3'- -CCGCG-UGCCCCgGc---CCGa-GCGGCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 66797 | 0.71 | 0.26694 |
Target: 5'- cGGCG-GCGGGGcCCGGGgaCGaCGACg -3' miRNA: 3'- -CCGCgUGCCCC-GGCCCgaGCgGCUGg -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 9040 | 0.71 | 0.254792 |
Target: 5'- -cCGC-CGGGGCgccccgcgugcucCGGGggCGCCGGCCg -3' miRNA: 3'- ccGCGuGCCCCG-------------GCCCgaGCGGCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 141747 | 0.71 | 0.25536 |
Target: 5'- aGGgGCGCGGGGCgCGcgccccgguGGCgUCGCCGGu- -3' miRNA: 3'- -CCgCGUGCCCCG-GC---------CCG-AGCGGCUgg -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 114914 | 0.71 | 0.249726 |
Target: 5'- gGGCGCACGGccCCGGcGUcgCGCuCGGCCu -3' miRNA: 3'- -CCGCGUGCCccGGCC-CGa-GCG-GCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 39953 | 0.71 | 0.26694 |
Target: 5'- uGGUGCugacccCGGGcGCCgucgccgccgcGGGCgcccCGCCGGCCg -3' miRNA: 3'- -CCGCGu-----GCCC-CGG-----------CCCGa---GCGGCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 63770 | 0.71 | 0.253659 |
Target: 5'- cGGCGCccccgcgucgccagGCGGGGUCGGccgucgccagcGcCUCGCCgGGCCc -3' miRNA: 3'- -CCGCG--------------UGCCCCGGCC-----------C-GAGCGG-CUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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