miRNA display CGI


Results 61 - 80 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29458 3' -65.5 NC_006151.1 + 60195 0.74 0.172919
Target:  5'- aGCaGCACGGGcGUgaagaUGGGCUCGCCGcgcgcGCCg -3'
miRNA:   3'- cCG-CGUGCCC-CG-----GCCCGAGCGGC-----UGG- -5'
29458 3' -65.5 NC_006151.1 + 81589 0.74 0.172919
Target:  5'- cGCGCGCGucGCCgGGGC-CGCCGGCg -3'
miRNA:   3'- cCGCGUGCccCGG-CCCGaGCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 22822 0.74 0.172919
Target:  5'- aGGUGCAgGGGGCgCGaGGCgagcgCGCUGcCCa -3'
miRNA:   3'- -CCGCGUgCCCCG-GC-CCGa----GCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 56913 0.74 0.175786
Target:  5'- cGGCGUguauguaaacacaaAUGGcGGCgGGGCgUCGCCGGCg -3'
miRNA:   3'- -CCGCG--------------UGCC-CCGgCCCG-AGCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 71091 0.74 0.177028
Target:  5'- cGGCGC-CGcGGGCgCGGGC--GCCGugCg -3'
miRNA:   3'- -CCGCGuGC-CCCG-GCCCGagCGGCugG- -5'
29458 3' -65.5 NC_006151.1 + 103029 0.74 0.177028
Target:  5'- aGCGCcuCGGGGCCuGGUUCGCgcugcUGGCCg -3'
miRNA:   3'- cCGCGu-GCCCCGGcCCGAGCG-----GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 103537 0.73 0.181224
Target:  5'- cGGCGCGCugguGGGcGCCGGGCa-GCCGcUCg -3'
miRNA:   3'- -CCGCGUG----CCC-CGGCCCGagCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 118171 0.73 0.181224
Target:  5'- uGGUGCGCGGccugaccgucgaGGCCGGcUUCGCCGGgCa -3'
miRNA:   3'- -CCGCGUGCC------------CCGGCCcGAGCGGCUgG- -5'
29458 3' -65.5 NC_006151.1 + 92141 0.73 0.182927
Target:  5'- cGCGCGCGGcgccaaggccaucauGGCCGcGGCcgugcgCGCCGACg -3'
miRNA:   3'- cCGCGUGCC---------------CCGGC-CCGa-----GCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 88456 0.73 0.185508
Target:  5'- cGCGUGCGGcGCCcGaGCUCGUCGGCCa -3'
miRNA:   3'- cCGCGUGCCcCGGcC-CGAGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 40069 0.73 0.185508
Target:  5'- cGGCcCGCGGGGgccUCGGGCgccgggGCCGGCCc -3'
miRNA:   3'- -CCGcGUGCCCC---GGCCCGag----CGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 17822 0.73 0.185508
Target:  5'- gGGCGCgGCGGGG-CGGGCg-GCC-ACCa -3'
miRNA:   3'- -CCGCG-UGCCCCgGCCCGagCGGcUGG- -5'
29458 3' -65.5 NC_006151.1 + 21546 0.73 0.185508
Target:  5'- cGGgGC-CGGGGCCuGGGCcUCGgCGAgCCc -3'
miRNA:   3'- -CCgCGuGCCCCGG-CCCG-AGCgGCU-GG- -5'
29458 3' -65.5 NC_006151.1 + 8968 0.73 0.185508
Target:  5'- cGCGCGCGccccgggaaGGGUCGGGCgauggcCGCCG-CCa -3'
miRNA:   3'- cCGCGUGC---------CCCGGCCCGa-----GCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 67998 0.73 0.18988
Target:  5'- cGGCGC-CGcGGCCacGGGCUCGgCGGCg -3'
miRNA:   3'- -CCGCGuGCcCCGG--CCCGAGCgGCUGg -5'
29458 3' -65.5 NC_006151.1 + 91746 0.73 0.18988
Target:  5'- cGGCGgGCGagcGGGCuCGGGCgggcggugugCGCCaGACCa -3'
miRNA:   3'- -CCGCgUGC---CCCG-GCCCGa---------GCGG-CUGG- -5'
29458 3' -65.5 NC_006151.1 + 122685 0.73 0.193893
Target:  5'- uGCGCGCGGcGGCCguGGaGCUCGCgcucuucgggcggCGGCCc -3'
miRNA:   3'- cCGCGUGCC-CCGG--CC-CGAGCG-------------GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 98360 0.73 0.194343
Target:  5'- gGGCGUGCGcGGGCUcuGGGCgcgcgcgcugCGCCuGGCCu -3'
miRNA:   3'- -CCGCGUGC-CCCGG--CCCGa---------GCGG-CUGG- -5'
29458 3' -65.5 NC_006151.1 + 135119 0.73 0.194343
Target:  5'- aGCGCGCGGGG-CGGGCUgGgCGGg- -3'
miRNA:   3'- cCGCGUGCCCCgGCCCGAgCgGCUgg -5'
29458 3' -65.5 NC_006151.1 + 66585 0.73 0.194343
Target:  5'- cGCGCGCGcGGCCGaGGCgcucgacuUCGCCG-CCu -3'
miRNA:   3'- cCGCGUGCcCCGGC-CCG--------AGCGGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.