miRNA display CGI


Results 81 - 100 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29458 3' -65.5 NC_006151.1 + 84384 0.73 0.198898
Target:  5'- cGGCGCGCGGGGaCGGGCggggaGCgGGu- -3'
miRNA:   3'- -CCGCGUGCCCCgGCCCGag---CGgCUgg -5'
29458 3' -65.5 NC_006151.1 + 117793 0.73 0.198898
Target:  5'- gGGCGCcacgcccgGCGGGGCgGGGCcccaCGCUuuaaGACCc -3'
miRNA:   3'- -CCGCG--------UGCCCCGgCCCGa---GCGG----CUGG- -5'
29458 3' -65.5 NC_006151.1 + 5868 0.73 0.198898
Target:  5'- aGCGCcCGGGGCCgccggGGGC-C-CCGGCCu -3'
miRNA:   3'- cCGCGuGCCCCGG-----CCCGaGcGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 135466 0.73 0.200745
Target:  5'- aGGUGCGCGccagcguguccgcgcGGGCCaGGCggCGCgCGGCCu -3'
miRNA:   3'- -CCGCGUGC---------------CCCGGcCCGa-GCG-GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 142157 0.73 0.203076
Target:  5'- cGGCGCAgGGGGCUcguccaccuccauGGGCU--CCGACUc -3'
miRNA:   3'- -CCGCGUgCCCCGG-------------CCCGAgcGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 122473 0.73 0.203545
Target:  5'- gGGCGC-CGaGGCCGGGgaCGCgGGCg -3'
miRNA:   3'- -CCGCGuGCcCCGGCCCgaGCGgCUGg -5'
29458 3' -65.5 NC_006151.1 + 121933 0.73 0.203545
Target:  5'- cGUGCugGGGGCgCuGGC-CGCCG-CCg -3'
miRNA:   3'- cCGCGugCCCCG-GcCCGaGCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 57842 0.73 0.203545
Target:  5'- gGGCGCACGGGuGCuccaCGGcGCUggucgcgcgcccCGCCGGCa -3'
miRNA:   3'- -CCGCGUGCCC-CG----GCC-CGA------------GCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 66549 0.73 0.203545
Target:  5'- gGGCGCGCGcGGCCGcGC-CGCCGuggACCc -3'
miRNA:   3'- -CCGCGUGCcCCGGCcCGaGCGGC---UGG- -5'
29458 3' -65.5 NC_006151.1 + 73255 0.73 0.203545
Target:  5'- cGgGCACGGGcGCCaGGCggUUGCCGGCg -3'
miRNA:   3'- cCgCGUGCCC-CGGcCCG--AGCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 72798 0.73 0.203545
Target:  5'- cGCGCACGGGuccucgaCGaGCUCGCCGGCg -3'
miRNA:   3'- cCGCGUGCCCcg-----GCcCGAGCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 28096 0.72 0.208286
Target:  5'- gGGCGUccucgaGCGGGGCgCGGcucCUCGUCGGCUc -3'
miRNA:   3'- -CCGCG------UGCCCCG-GCCc--GAGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 74138 0.72 0.208286
Target:  5'- gGGUGCAgCGGGuGCCgGGGgUCGuCCGugCc -3'
miRNA:   3'- -CCGCGU-GCCC-CGG-CCCgAGC-GGCugG- -5'
29458 3' -65.5 NC_006151.1 + 29473 0.72 0.208286
Target:  5'- gGGCGCGCcGGGagaggaaaGGGCgCGCUGGCCu -3'
miRNA:   3'- -CCGCGUGcCCCgg------CCCGaGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 57239 0.72 0.208286
Target:  5'- cGGCGCGCGcGGCCucGGCgucCGCgCGGCCc -3'
miRNA:   3'- -CCGCGUGCcCCGGc-CCGa--GCG-GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 57590 0.72 0.208286
Target:  5'- aGGCGCACGugaccaGGCCGGcCUCGgCCGcgGCCg -3'
miRNA:   3'- -CCGCGUGCc-----CCGGCCcGAGC-GGC--UGG- -5'
29458 3' -65.5 NC_006151.1 + 6014 0.72 0.213122
Target:  5'- cGGCgGC-CGGGGacCCGGGCUCGUCcuCCu -3'
miRNA:   3'- -CCG-CGuGCCCC--GGCCCGAGCGGcuGG- -5'
29458 3' -65.5 NC_006151.1 + 125242 0.72 0.218054
Target:  5'- cGGCGCucccccggcccgGCGGGGacgcCCGaGC-CGCCGGCCg -3'
miRNA:   3'- -CCGCG------------UGCCCC----GGCcCGaGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 68267 0.72 0.218054
Target:  5'- cGGCGacgguCGCGGcGCCGGGCgccaCGgCGGCCa -3'
miRNA:   3'- -CCGC-----GUGCCcCGGCCCGa---GCgGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 118226 0.72 0.218054
Target:  5'- gGGCGCcCGGaccaCCGGGCUCGgCGGCg -3'
miRNA:   3'- -CCGCGuGCCcc--GGCCCGAGCgGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.