miRNA display CGI


Results 101 - 120 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29458 3' -65.5 NC_006151.1 + 118226 0.72 0.218054
Target:  5'- gGGCGCcCGGaccaCCGGGCUCGgCGGCg -3'
miRNA:   3'- -CCGCGuGCCcc--GGCCCGAGCgGCUGg -5'
29458 3' -65.5 NC_006151.1 + 3383 0.72 0.220054
Target:  5'- aGGCG-GCGaGGGCCgccucggaGGGCcgcggcgugugggucUCGCCGGCCg -3'
miRNA:   3'- -CCGCgUGC-CCCGG--------CCCG---------------AGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 92659 0.72 0.22207
Target:  5'- aGGCGCucgcccugcugcCGGcGGCCGGggacgcgcGCUCGCCGcgcGCCg -3'
miRNA:   3'- -CCGCGu-----------GCC-CCGGCC--------CGAGCGGC---UGG- -5'
29458 3' -65.5 NC_006151.1 + 111858 0.72 0.223084
Target:  5'- gGGCGCuCGGGGUCGcaGGCcgucUCGCCGucGCUg -3'
miRNA:   3'- -CCGCGuGCCCCGGC--CCG----AGCGGC--UGG- -5'
29458 3' -65.5 NC_006151.1 + 57500 0.72 0.223084
Target:  5'- cGCGCACGcgcucGGCCGcGGCggCGgCGGCCg -3'
miRNA:   3'- cCGCGUGCc----CCGGC-CCGa-GCgGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 75157 0.72 0.223592
Target:  5'- gGGCGCACGGGcaucauGCCGGGCcacuccucgaggaagCGCUGcaugaGCCc -3'
miRNA:   3'- -CCGCGUGCCC------CGGCCCGa--------------GCGGC-----UGG- -5'
29458 3' -65.5 NC_006151.1 + 89562 0.72 0.225123
Target:  5'- aGGC-CGCGaGGCUgaugggcacgcccauGGGCUCGCCGGCg -3'
miRNA:   3'- -CCGcGUGCcCCGG---------------CCCGAGCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 84429 0.72 0.226148
Target:  5'- cGGCGCGCGGcGGCgCGcGGCccauguccccccgCGCCaugGACCg -3'
miRNA:   3'- -CCGCGUGCC-CCG-GC-CCGa------------GCGG---CUGG- -5'
29458 3' -65.5 NC_006151.1 + 10995 0.72 0.228211
Target:  5'- aGCGgGCcgGGGGCCccGGCUCGCCcGCCc -3'
miRNA:   3'- cCGCgUG--CCCCGGc-CCGAGCGGcUGG- -5'
29458 3' -65.5 NC_006151.1 + 54663 0.72 0.228211
Target:  5'- uGGacgaGCACGaccuGGCCGGGCaccugcgcgUCGCCGGCa -3'
miRNA:   3'- -CCg---CGUGCc---CCGGCCCG---------AGCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 64767 0.72 0.228211
Target:  5'- cGUGCGCGGGggcugguuGCCgGGGCgcgaGCUGGCCa -3'
miRNA:   3'- cCGCGUGCCC--------CGG-CCCGag--CGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 5923 0.72 0.228211
Target:  5'- cGGCgGC-CGGGGCCcGGa--GCCGGCCc -3'
miRNA:   3'- -CCG-CGuGCCCCGGcCCgagCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 10561 0.72 0.233439
Target:  5'- cGGCGCccaaugGCGcGGCC-GGCUCGgCGGCCc -3'
miRNA:   3'- -CCGCG------UGCcCCGGcCCGAGCgGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 3934 0.72 0.233439
Target:  5'- gGGgGCAgGccGGGCgCGGGCUCcGCgGGCCc -3'
miRNA:   3'- -CCgCGUgC--CCCG-GCCCGAG-CGgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 118880 0.72 0.233439
Target:  5'- cGGCgGCGCGGcGGCgaCGcGGC-CGCCGGCg -3'
miRNA:   3'- -CCG-CGUGCC-CCG--GC-CCGaGCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 31207 0.72 0.233439
Target:  5'- uGGCcCGCGuccaGGCCGGGCccccgGCCGGCCg -3'
miRNA:   3'- -CCGcGUGCc---CCGGCCCGag---CGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 129106 0.72 0.238229
Target:  5'- uGCGCACGagcgccaGGGCCGaGGCgCGCUGggcGCCa -3'
miRNA:   3'- cCGCGUGC-------CCCGGC-CCGaGCGGC---UGG- -5'
29458 3' -65.5 NC_006151.1 + 135164 0.72 0.238229
Target:  5'- gGGCGCggcccggACGGGcGCCGGcuGC-CGCCG-CCg -3'
miRNA:   3'- -CCGCG-------UGCCC-CGGCC--CGaGCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 102141 0.72 0.238766
Target:  5'- gGGCGCGcCGGGcuGCUGGaGCgcuUCGCCGAgCu -3'
miRNA:   3'- -CCGCGU-GCCC--CGGCC-CG---AGCGGCUgG- -5'
29458 3' -65.5 NC_006151.1 + 49439 0.71 0.242556
Target:  5'- aGGCGaaCGCGuaccucguccagacGGGCCGGGCcccCGUCGACUg -3'
miRNA:   3'- -CCGC--GUGC--------------CCCGGCCCGa--GCGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.