miRNA display CGI


Results 121 - 140 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29458 3' -65.5 NC_006151.1 + 106722 0.71 0.243648
Target:  5'- uGgGCACGGGcaugacguucaccGUcaCGGGCUCGCCG-CCg -3'
miRNA:   3'- cCgCGUGCCC-------------CG--GCCCGAGCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 59360 0.71 0.244195
Target:  5'- cGCGCACGGGGCgccgCGcGGCcgUCGUCGcguCCa -3'
miRNA:   3'- cCGCGUGCCCCG----GC-CCG--AGCGGCu--GG- -5'
29458 3' -65.5 NC_006151.1 + 7018 0.71 0.244195
Target:  5'- cGGCcccCGCGGcGGCCaucucGGCUCGCCcgGGCCa -3'
miRNA:   3'- -CCGc--GUGCC-CCGGc----CCGAGCGG--CUGG- -5'
29458 3' -65.5 NC_006151.1 + 68963 0.71 0.249726
Target:  5'- cGGCGCACGGacUCGcGGa-CGCCGGCCa -3'
miRNA:   3'- -CCGCGUGCCccGGC-CCgaGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 75639 0.71 0.249726
Target:  5'- gGGCuuGCcgucgucgGGGGCC-GGCUCGCCG-CCg -3'
miRNA:   3'- -CCGcgUG--------CCCCGGcCCGAGCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 27384 0.71 0.249726
Target:  5'- gGGCGagaacgGCGGGGagggcaCGGGCUCGUaccaguCGGCCc -3'
miRNA:   3'- -CCGCg-----UGCCCCg-----GCCCGAGCG------GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 22531 0.71 0.249726
Target:  5'- aGuCGgGCGGGGCCGGGUcaggCGgaGGCCa -3'
miRNA:   3'- cC-GCgUGCCCCGGCCCGa---GCggCUGG- -5'
29458 3' -65.5 NC_006151.1 + 114914 0.71 0.249726
Target:  5'- gGGCGCACGGccCCGGcGUcgCGCuCGGCCu -3'
miRNA:   3'- -CCGCGUGCCccGGCC-CGa-GCG-GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 141461 0.71 0.249726
Target:  5'- gGGCGguCuGGaGCCGGGggCGCCGAguCCg -3'
miRNA:   3'- -CCGCguGcCC-CGGCCCgaGCGGCU--GG- -5'
29458 3' -65.5 NC_006151.1 + 63770 0.71 0.253659
Target:  5'- cGGCGCccccgcgucgccagGCGGGGUCGGccgucgccagcGcCUCGCCgGGCCc -3'
miRNA:   3'- -CCGCG--------------UGCCCCGGCC-----------C-GAGCGG-CUGG- -5'
29458 3' -65.5 NC_006151.1 + 9040 0.71 0.254792
Target:  5'- -cCGC-CGGGGCgccccgcgugcucCGGGggCGCCGGCCg -3'
miRNA:   3'- ccGCGuGCCCCG-------------GCCCgaGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 97996 0.71 0.25536
Target:  5'- gGGCG-GCGuGGCCGcguaGGCggCGCCGGCCa -3'
miRNA:   3'- -CCGCgUGCcCCGGC----CCGa-GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 141747 0.71 0.25536
Target:  5'- aGGgGCGCGGGGCgCGcgccccgguGGCgUCGCCGGu- -3'
miRNA:   3'- -CCgCGUGCCCCG-GC---------CCG-AGCGGCUgg -5'
29458 3' -65.5 NC_006151.1 + 101766 0.71 0.260519
Target:  5'- cGCGCcgccgacGCGGGGCCccgGGGCcaucccguccUCGCCGucGCCc -3'
miRNA:   3'- cCGCG-------UGCCCCGG---CCCG----------AGCGGC--UGG- -5'
29458 3' -65.5 NC_006151.1 + 71977 0.71 0.261098
Target:  5'- cGGUGCgGCGGGGgCagcuGGUagCGCCGGCCg -3'
miRNA:   3'- -CCGCG-UGCCCCgGc---CCGa-GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 40567 0.71 0.261098
Target:  5'- cGGCG-GCGGcGGCCgcggcggaGGGCUCGgCGGCg -3'
miRNA:   3'- -CCGCgUGCC-CCGG--------CCCGAGCgGCUGg -5'
29458 3' -65.5 NC_006151.1 + 2811 0.71 0.261098
Target:  5'- cGGCGCACugGGcGGCCGGGUccaggcggaCGCgGACg -3'
miRNA:   3'- -CCGCGUG--CC-CCGGCCCGa--------GCGgCUGg -5'
29458 3' -65.5 NC_006151.1 + 130963 0.71 0.26694
Target:  5'- gGGCGCG-GGGGCCGGuacC-CCGGCCg -3'
miRNA:   3'- -CCGCGUgCCCCGGCCcgaGcGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 66797 0.71 0.26694
Target:  5'- cGGCG-GCGGGGcCCGGGgaCGaCGACg -3'
miRNA:   3'- -CCGCgUGCCCC-GGCCCgaGCgGCUGg -5'
29458 3' -65.5 NC_006151.1 + 39953 0.71 0.26694
Target:  5'- uGGUGCugacccCGGGcGCCgucgccgccgcGGGCgcccCGCCGGCCg -3'
miRNA:   3'- -CCGCGu-----GCCC-CGG-----------CCCGa---GCGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.