miRNA display CGI


Results 141 - 160 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29458 3' -65.5 NC_006151.1 + 130963 0.71 0.26694
Target:  5'- gGGCGCG-GGGGCCGGuacC-CCGGCCg -3'
miRNA:   3'- -CCGCGUgCCCCGGCCcgaGcGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 99720 0.71 0.26694
Target:  5'- aGGCGCcgACGa-GCgCGGcGCUCGUCGACCu -3'
miRNA:   3'- -CCGCG--UGCccCG-GCC-CGAGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 99352 0.71 0.272887
Target:  5'- cGGCuGCACGGcGGUCGucGGCggCGUCGugCa -3'
miRNA:   3'- -CCG-CGUGCC-CCGGC--CCGa-GCGGCugG- -5'
29458 3' -65.5 NC_006151.1 + 103677 0.71 0.272887
Target:  5'- cGGCGCGCGcGGCgGGGgugcugcgCGCCG-CCg -3'
miRNA:   3'- -CCGCGUGCcCCGgCCCga------GCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 92186 0.71 0.272887
Target:  5'- cGGCG-ACGGGGCCGccgacgcGC-CGCCGcgGCCg -3'
miRNA:   3'- -CCGCgUGCCCCGGCc------CGaGCGGC--UGG- -5'
29458 3' -65.5 NC_006151.1 + 6235 0.71 0.272887
Target:  5'- cGGCGC-CGGGaGCCcuGGCUgcCGCCGucgggGCCg -3'
miRNA:   3'- -CCGCGuGCCC-CGGc-CCGA--GCGGC-----UGG- -5'
29458 3' -65.5 NC_006151.1 + 122163 0.71 0.272887
Target:  5'- cGCGCACGaucGGCggCGGGCUCGUgGugCc -3'
miRNA:   3'- cCGCGUGCc--CCG--GCCCGAGCGgCugG- -5'
29458 3' -65.5 NC_006151.1 + 3271 0.71 0.275296
Target:  5'- cGGCGCGCggcgaugugcgccagGGcGGCCGGGUcgaaggugagCGCCGggcGCCa -3'
miRNA:   3'- -CCGCGUG---------------CC-CCGGCCCGa---------GCGGC---UGG- -5'
29458 3' -65.5 NC_006151.1 + 133737 0.7 0.278941
Target:  5'- uGGCGagcgaGUGGGGUCGGGCgcgUGCgGAUCg -3'
miRNA:   3'- -CCGCg----UGCCCCGGCCCGa--GCGgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 116854 0.7 0.278941
Target:  5'- cGGCG-GCGGGGaaGGccGCgucgUCGCCGGCCu -3'
miRNA:   3'- -CCGCgUGCCCCggCC--CG----AGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 88966 0.7 0.278941
Target:  5'- cGGCGCGCGGGaagaCGGcGCacccgaaGCUGACCg -3'
miRNA:   3'- -CCGCGUGCCCcg--GCC-CGag-----CGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 8239 0.7 0.278941
Target:  5'- cGGCGgGgaGGGCCGGGCcggcgCGCCGggacGCCc -3'
miRNA:   3'- -CCGCgUgcCCCGGCCCGa----GCGGC----UGG- -5'
29458 3' -65.5 NC_006151.1 + 97376 0.7 0.278941
Target:  5'- gGGCGCgGCGGGGgCGucGGcCUCGuCCGugCc -3'
miRNA:   3'- -CCGCG-UGCCCCgGC--CC-GAGC-GGCugG- -5'
29458 3' -65.5 NC_006151.1 + 75094 0.7 0.278941
Target:  5'- aGGCGCAgguCGGcguuGCCGGGCgccagcagcuggUCGgCGGCCg -3'
miRNA:   3'- -CCGCGU---GCCc---CGGCCCG------------AGCgGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 44844 0.7 0.278941
Target:  5'- gGGCGaGCGGGGUCguggaggggGGGCgcccucucUCGCcCGACCu -3'
miRNA:   3'- -CCGCgUGCCCCGG---------CCCG--------AGCG-GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 27023 0.7 0.278941
Target:  5'- gGGCcugccaGCAgGGGGCCGaGGggCGCUGGCg -3'
miRNA:   3'- -CCG------CGUgCCCCGGC-CCgaGCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 18766 0.7 0.278941
Target:  5'- gGGUGCcCGGGGcCCGGGCcgggGCCGucagcuCCu -3'
miRNA:   3'- -CCGCGuGCCCC-GGCCCGag--CGGCu-----GG- -5'
29458 3' -65.5 NC_006151.1 + 27187 0.7 0.278941
Target:  5'- gGGCGcCAgGGGGCCGcGCagaaggCGCCGggGCCc -3'
miRNA:   3'- -CCGC-GUgCCCCGGCcCGa-----GCGGC--UGG- -5'
29458 3' -65.5 NC_006151.1 + 27323 0.7 0.281392
Target:  5'- cGGgGgACGGGGggcugcuccccgggaCCGGGgUCGUgGGCCg -3'
miRNA:   3'- -CCgCgUGCCCC---------------GGCCCgAGCGgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 29207 0.7 0.285101
Target:  5'- gGGCGCgGCGGGGUgGGGaugggucacCGCCGggucgGCCg -3'
miRNA:   3'- -CCGCG-UGCCCCGgCCCga-------GCGGC-----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.