miRNA display CGI


Results 161 - 180 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29458 3' -65.5 NC_006151.1 + 118446 0.7 0.285101
Target:  5'- uGCGCGCGGcucGGCCuGGC-CGCgGACg -3'
miRNA:   3'- cCGCGUGCC---CCGGcCCGaGCGgCUGg -5'
29458 3' -65.5 NC_006151.1 + 104575 0.7 0.285101
Target:  5'- cGGCGCGCGGacgugcugcaGGCCGGcggcagccGCggCGCCGAg- -3'
miRNA:   3'- -CCGCGUGCC----------CCGGCC--------CGa-GCGGCUgg -5'
29458 3' -65.5 NC_006151.1 + 20207 0.7 0.285101
Target:  5'- cGCGCGCaGcGCCGGGCcgCGCaggCGACCc -3'
miRNA:   3'- cCGCGUGcCcCGGCCCGa-GCG---GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 29207 0.7 0.285101
Target:  5'- gGGCGCgGCGGGGUgGGGaugggucacCGCCGggucgGCCg -3'
miRNA:   3'- -CCGCG-UGCCCCGgCCCga-------GCGGC-----UGG- -5'
29458 3' -65.5 NC_006151.1 + 9387 0.7 0.285723
Target:  5'- gGGCccccCGCGcGGGUCGGGCcuucuuccccaucccCGCCGGCCc -3'
miRNA:   3'- -CCGc---GUGC-CCCGGCCCGa--------------GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 98537 0.7 0.290106
Target:  5'- cGGCGacgacacCACGGccgcccucaccgaGGCCGGGCUgCGCaccuCGGCCg -3'
miRNA:   3'- -CCGC-------GUGCC-------------CCGGCCCGA-GCG----GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 117235 0.7 0.291367
Target:  5'- cGCGCGCGuccacgucggcGGGCCcgaggcgcGGGCcgCGCgCGGCCg -3'
miRNA:   3'- cCGCGUGC-----------CCCGG--------CCCGa-GCG-GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 87315 0.7 0.291367
Target:  5'- uGGCGCACGccguGCCGGcGCUC-CCgGGCCu -3'
miRNA:   3'- -CCGCGUGCcc--CGGCC-CGAGcGG-CUGG- -5'
29458 3' -65.5 NC_006151.1 + 81356 0.7 0.291367
Target:  5'- cGCGCcCGGGGCCccggcGGGCgccagcgcgaGCCGcGCCg -3'
miRNA:   3'- cCGCGuGCCCCGG-----CCCGag--------CGGC-UGG- -5'
29458 3' -65.5 NC_006151.1 + 85329 0.7 0.297741
Target:  5'- cGCGCugGaGGGCCacagcGuGCUCGCCGcGCUg -3'
miRNA:   3'- cCGCGugC-CCCGGc----C-CGAGCGGC-UGG- -5'
29458 3' -65.5 NC_006151.1 + 81705 0.7 0.297741
Target:  5'- cGCGCGagguccagcCGGGgcGCCGGGUccUCGCCGAagguCCa -3'
miRNA:   3'- cCGCGU---------GCCC--CGGCCCG--AGCGGCU----GG- -5'
29458 3' -65.5 NC_006151.1 + 100091 0.7 0.297741
Target:  5'- aGGCGC-CGGcGCCGGcGCcgcccUCGCUGGCg -3'
miRNA:   3'- -CCGCGuGCCcCGGCC-CG-----AGCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 75811 0.7 0.297741
Target:  5'- uGGUGCA-GGaGCCGcuGGCgcaCGCCGGCCg -3'
miRNA:   3'- -CCGCGUgCCcCGGC--CCGa--GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 17016 0.7 0.297741
Target:  5'- uGGCGCG-GGuGGCCGGGaUC-CCGGCg -3'
miRNA:   3'- -CCGCGUgCC-CCGGCCCgAGcGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 100619 0.7 0.304223
Target:  5'- uGGCGCGCuGGGaccuggucagcGCCGcGCUgCGCCGcGCCg -3'
miRNA:   3'- -CCGCGUG-CCC-----------CGGCcCGA-GCGGC-UGG- -5'
29458 3' -65.5 NC_006151.1 + 19833 0.7 0.304223
Target:  5'- cGGUG-ACGGGGcCCGGGgUCGUcuCGGCg -3'
miRNA:   3'- -CCGCgUGCCCC-GGCCCgAGCG--GCUGg -5'
29458 3' -65.5 NC_006151.1 + 31758 0.7 0.304223
Target:  5'- cGCGCcuGCGGcGG-CGGGCgcgCGCCGGgCg -3'
miRNA:   3'- cCGCG--UGCC-CCgGCCCGa--GCGGCUgG- -5'
29458 3' -65.5 NC_006151.1 + 137078 0.7 0.304223
Target:  5'- uGGCGCACcGGcGCCaGGCcuucgcggUGCUGGCCg -3'
miRNA:   3'- -CCGCGUGcCC-CGGcCCGa-------GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 69800 0.7 0.310813
Target:  5'- uGGCgGCACaGGcGCUccaGGcGCUCGCCGuCCa -3'
miRNA:   3'- -CCG-CGUGcCC-CGG---CC-CGAGCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 139429 0.7 0.310813
Target:  5'- aGGUcgGCGCGGGGacgaCGGGUUaaaggcgcccCGCCGcCCg -3'
miRNA:   3'- -CCG--CGUGCCCCg---GCCCGA----------GCGGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.