miRNA display CGI


Results 81 - 100 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29458 3' -65.5 NC_006151.1 + 11236 0.67 0.473347
Target:  5'- gGGC-CGCGaGGGCCGcGGC--GgCGACCc -3'
miRNA:   3'- -CCGcGUGC-CCCGGC-CCGagCgGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 27236 0.67 0.473347
Target:  5'- cGCGCAccuccuCGGGGUCGGGCgggggC-CCGuACUc -3'
miRNA:   3'- cCGCGU------GCCCCGGCCCGa----GcGGC-UGG- -5'
29458 3' -65.5 NC_006151.1 + 36190 0.67 0.473347
Target:  5'- -cCGC-CGGGGCuCGGGCgagaUCGUgGugCu -3'
miRNA:   3'- ccGCGuGCCCCG-GCCCG----AGCGgCugG- -5'
29458 3' -65.5 NC_006151.1 + 106793 0.67 0.473347
Target:  5'- uGGC-CGCGGcGG-CGGuGCUCGUCGggGCCc -3'
miRNA:   3'- -CCGcGUGCC-CCgGCC-CGAGCGGC--UGG- -5'
29458 3' -65.5 NC_006151.1 + 110144 0.67 0.473347
Target:  5'- uGCGCGCcaccggacucGGGGCCcuGGCccugcucaUCGCCGcguGCCg -3'
miRNA:   3'- cCGCGUG----------CCCCGGc-CCG--------AGCGGC---UGG- -5'
29458 3' -65.5 NC_006151.1 + 91236 0.67 0.472472
Target:  5'- aGGCGaCGCucgGGGaGCCGGGCccCGUCGcgaggacGCCc -3'
miRNA:   3'- -CCGC-GUG---CCC-CGGCCCGa-GCGGC-------UGG- -5'
29458 3' -65.5 NC_006151.1 + 133222 0.67 0.472472
Target:  5'- aGGCGUGCGucgcgccgcgccaGGGCaCGuuGGcCUCGCaCGGCCu -3'
miRNA:   3'- -CCGCGUGC-------------CCCG-GC--CC-GAGCG-GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 109473 0.67 0.470727
Target:  5'- aGCgGCACGGGGagcccCCGcGGCUcauguucacaccucCGCCGcuGCCg -3'
miRNA:   3'- cCG-CGUGCCCC-----GGC-CCGA--------------GCGGC--UGG- -5'
29458 3' -65.5 NC_006151.1 + 50437 0.67 0.464642
Target:  5'- uGCGCGcCGGcGGCCuGGGCacCGCCcGCg -3'
miRNA:   3'- cCGCGU-GCC-CCGG-CCCGa-GCGGcUGg -5'
29458 3' -65.5 NC_006151.1 + 2307 0.67 0.464642
Target:  5'- cGGCGCcCGGGGUCagcaccagcgGGGCggccucggCGUCGGgCu -3'
miRNA:   3'- -CCGCGuGCCCCGG----------CCCGa-------GCGGCUgG- -5'
29458 3' -65.5 NC_006151.1 + 38208 0.67 0.464642
Target:  5'- aGCGUggACGGGGCCcgcgcccgcGaGGC-CGCCugGACCu -3'
miRNA:   3'- cCGCG--UGCCCCGG---------C-CCGaGCGG--CUGG- -5'
29458 3' -65.5 NC_006151.1 + 139565 0.67 0.462048
Target:  5'- cGGCGCcCGGuccgcgagcGCCuGGGCUCGCgcccccccgagcggCGGCCc -3'
miRNA:   3'- -CCGCGuGCCc--------CGG-CCCGAGCG--------------GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 100481 0.67 0.456023
Target:  5'- aGGCGCugGGccugcaGGCgcccguguucCGGacGCUgugCGCCGACCa -3'
miRNA:   3'- -CCGCGugCC------CCG----------GCC--CGA---GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 129497 0.67 0.456023
Target:  5'- gGGCaGCGCGGGcgcgaugacgaGCCGcuuGC-CGCCGACg -3'
miRNA:   3'- -CCG-CGUGCCC-----------CGGCc--CGaGCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 137125 0.67 0.456023
Target:  5'- gGGCGCGCGacGGCgCGGcGCgacgcggCGCCGgagaugGCCg -3'
miRNA:   3'- -CCGCGUGCc-CCG-GCC-CGa------GCGGC------UGG- -5'
29458 3' -65.5 NC_006151.1 + 28227 0.67 0.456023
Target:  5'- -cCGUcgAgGGGGCCGGGC-CGaCgGGCCc -3'
miRNA:   3'- ccGCG--UgCCCCGGCCCGaGC-GgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 39802 0.67 0.456023
Target:  5'- -cCGCugGGGGCuCGGcGCccCGCugCGGCCc -3'
miRNA:   3'- ccGCGugCCCCG-GCC-CGa-GCG--GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 54723 0.67 0.456023
Target:  5'- uGGaCGa--GGuGGCCGaGCUCGCCGagGCCa -3'
miRNA:   3'- -CC-GCgugCC-CCGGCcCGAGCGGC--UGG- -5'
29458 3' -65.5 NC_006151.1 + 99151 0.67 0.456023
Target:  5'- cGUGCACGuGGCCGccGC-CGCgGACCu -3'
miRNA:   3'- cCGCGUGCcCCGGCc-CGaGCGgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 43936 0.67 0.456023
Target:  5'- aGgGagaGGGGCCGGGggccCUCcCCGGCCg -3'
miRNA:   3'- cCgCgugCCCCGGCCC----GAGcGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.