miRNA display CGI


Results 101 - 120 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29458 3' -65.5 NC_006151.1 + 54723 0.67 0.456023
Target:  5'- uGGaCGa--GGuGGCCGaGCUCGCCGagGCCa -3'
miRNA:   3'- -CC-GCgugCC-CCGGCcCGAGCGGC--UGG- -5'
29458 3' -65.5 NC_006151.1 + 99151 0.67 0.456023
Target:  5'- cGUGCACGuGGCCGccGC-CGCgGACCu -3'
miRNA:   3'- cCGCGUGCcCCGGCc-CGaGCGgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 112032 0.67 0.456023
Target:  5'- cGGCGggaGCuGGGGCCggcGGGCgggCGgCGGCg -3'
miRNA:   3'- -CCGCg--UG-CCCCGG---CCCGa--GCgGCUGg -5'
29458 3' -65.5 NC_006151.1 + 22074 0.67 0.44749
Target:  5'- aGGC-CACGuGGGCgcgguacgUGGGC-CGCCGguggGCCa -3'
miRNA:   3'- -CCGcGUGC-CCCG--------GCCCGaGCGGC----UGG- -5'
29458 3' -65.5 NC_006151.1 + 59212 0.67 0.44749
Target:  5'- -aCGCGCGuGGGCCccGGGaacgUCuGCCGGCUg -3'
miRNA:   3'- ccGCGUGC-CCCGG--CCCg---AG-CGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 4393 0.67 0.44749
Target:  5'- cGGCGCG-GGGGuCCGcGGCgcgGCCcggguaGGCCa -3'
miRNA:   3'- -CCGCGUgCCCC-GGC-CCGag-CGG------CUGG- -5'
29458 3' -65.5 NC_006151.1 + 56548 0.67 0.44749
Target:  5'- gGGCcccuGCuCGGccuGCCGGGCgacgCGCCG-CCg -3'
miRNA:   3'- -CCG----CGuGCCc--CGGCCCGa---GCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 90663 0.67 0.44749
Target:  5'- -aUGCGCGGGGCggCGGGC-CGCUuguCCc -3'
miRNA:   3'- ccGCGUGCCCCG--GCCCGaGCGGcu-GG- -5'
29458 3' -65.5 NC_006151.1 + 97629 0.67 0.44749
Target:  5'- cGGCGCGCGGccaugucGuuGGuGCgCGCCG-CCu -3'
miRNA:   3'- -CCGCGUGCCc------CggCC-CGaGCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 118059 0.67 0.44749
Target:  5'- cGCGcCGCGccGCUGGGCUacguguacgugaCGCCGAUCg -3'
miRNA:   3'- cCGC-GUGCccCGGCCCGA------------GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 58282 0.67 0.44749
Target:  5'- cGCGCACgucaaaGGGGUCGcucaucucgccccGGCguuucagcggcggcgCGCCGGCCu -3'
miRNA:   3'- cCGCGUG------CCCCGGC-------------CCGa--------------GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 132857 0.67 0.446641
Target:  5'- cGGCcgGCcCGGGGCCgcgccccccagcaGGGcCUCGUcgaacgCGACCa -3'
miRNA:   3'- -CCG--CGuGCCCCGG-------------CCC-GAGCG------GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 60796 0.67 0.439046
Target:  5'- cGUGCAC---GCUGGGCUCGCCGcGCa -3'
miRNA:   3'- cCGCGUGcccCGGCCCGAGCGGC-UGg -5'
29458 3' -65.5 NC_006151.1 + 77102 0.67 0.439046
Target:  5'- --aGCGCGGGcGCggCGGGCgcgCGCCcacaaaGGCCg -3'
miRNA:   3'- ccgCGUGCCC-CG--GCCCGa--GCGG------CUGG- -5'
29458 3' -65.5 NC_006151.1 + 77510 0.67 0.439046
Target:  5'- uGCGCACGGaGCU-GGCgCGCCucGGCCg -3'
miRNA:   3'- cCGCGUGCCcCGGcCCGaGCGG--CUGG- -5'
29458 3' -65.5 NC_006151.1 + 101390 0.67 0.439046
Target:  5'- cGGCGCGCGccuucuucgacGGCCucuGGGCgcagcgCGCCGAguCCu -3'
miRNA:   3'- -CCGCGUGCc----------CCGG---CCCGa-----GCGGCU--GG- -5'
29458 3' -65.5 NC_006151.1 + 124062 0.67 0.439046
Target:  5'- uGGaCGCGCGGacGGCCGuGCgCGCggccgCGACCg -3'
miRNA:   3'- -CC-GCGUGCC--CCGGCcCGaGCG-----GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 14064 0.67 0.439046
Target:  5'- gGGUGCGUGGcGGCCcGGCcgacggcacUCGCCGcCCc -3'
miRNA:   3'- -CCGCGUGCC-CCGGcCCG---------AGCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 63920 0.67 0.439046
Target:  5'- cGCGCGCGccGUgGGGCUCGCguCGuCCg -3'
miRNA:   3'- cCGCGUGCccCGgCCCGAGCG--GCuGG- -5'
29458 3' -65.5 NC_006151.1 + 31253 0.67 0.439046
Target:  5'- aGCGgGCGGGcgaGCCgGGGCcC-CCGGCCc -3'
miRNA:   3'- cCGCgUGCCC---CGG-CCCGaGcGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.