miRNA display CGI


Results 121 - 140 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29458 3' -65.5 NC_006151.1 + 63920 0.67 0.439046
Target:  5'- cGCGCGCGccGUgGGGCUCGCguCGuCCg -3'
miRNA:   3'- cCGCGUGCccCGgCCCGAGCG--GCuGG- -5'
29458 3' -65.5 NC_006151.1 + 136641 0.67 0.439046
Target:  5'- cGGCGCccgUGGGGCgcucgccccuCGGGgagCGCgCGGCCg -3'
miRNA:   3'- -CCGCGu--GCCCCG----------GCCCga-GCG-GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 4780 0.67 0.430695
Target:  5'- cGgGCACGGgcccGGCCGcGGCgcgguaGCgGGCCg -3'
miRNA:   3'- cCgCGUGCC----CCGGC-CCGag----CGgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 91685 0.67 0.430695
Target:  5'- uGGUGCGCGuGGGUgGGGUg-GCgGuCCa -3'
miRNA:   3'- -CCGCGUGC-CCCGgCCCGagCGgCuGG- -5'
29458 3' -65.5 NC_006151.1 + 110923 0.67 0.430695
Target:  5'- aGGUuCACGaGGGCCaGGGaggUGCCGAUa -3'
miRNA:   3'- -CCGcGUGC-CCCGG-CCCga-GCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 125363 0.67 0.430695
Target:  5'- aGGCGCACGuGaacgacauGCUGGGC-CGCaucgCGGCCg -3'
miRNA:   3'- -CCGCGUGC-Cc-------CGGCCCGaGCG----GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 54072 0.67 0.430695
Target:  5'- uGGCGCGCGGacccucuGCgGcGGCggCGgCGGCCa -3'
miRNA:   3'- -CCGCGUGCCc------CGgC-CCGa-GCgGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 87417 0.67 0.430695
Target:  5'- uGGUGCAggcccagcCGGuGGCCGuGCcCGCCGccGCCg -3'
miRNA:   3'- -CCGCGU--------GCC-CCGGCcCGaGCGGC--UGG- -5'
29458 3' -65.5 NC_006151.1 + 111737 0.67 0.430695
Target:  5'- cGCGCACguaGGGGUCgcaGGGgaCGUgGGCCc -3'
miRNA:   3'- cCGCGUG---CCCCGG---CCCgaGCGgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 28169 0.67 0.429865
Target:  5'- cGGCGUcguugggGCGGcgagugccgucGGCCGGGC-CGCCacgcACCc -3'
miRNA:   3'- -CCGCG-------UGCC-----------CCGGCCCGaGCGGc---UGG- -5'
29458 3' -65.5 NC_006151.1 + 27563 0.67 0.429865
Target:  5'- gGGCugGgACGGGGgCCGGGUgggugggcgaggcUCcccgacGCCGACCc -3'
miRNA:   3'- -CCG--CgUGCCCC-GGCCCG-------------AG------CGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 118729 0.67 0.422437
Target:  5'- uGCuGCACGGcuacguGCUGGGCcCGgCGGCCg -3'
miRNA:   3'- cCG-CGUGCCc-----CGGCCCGaGCgGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 31342 0.67 0.422437
Target:  5'- cGGCGC-CGuGGGCCcgaccccGGUccgCGCCGGCa -3'
miRNA:   3'- -CCGCGuGC-CCCGGc------CCGa--GCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 62109 0.67 0.422437
Target:  5'- gGGCGCGgcCGuGGUCGGGCUgaUGCuCGGCg -3'
miRNA:   3'- -CCGCGU--GCcCCGGCCCGA--GCG-GCUGg -5'
29458 3' -65.5 NC_006151.1 + 69141 0.67 0.422437
Target:  5'- gGGCGCGCGGGugcucgacGCCGugccGCUCGCacuccuCGGCg -3'
miRNA:   3'- -CCGCGUGCCC--------CGGCc---CGAGCG------GCUGg -5'
29458 3' -65.5 NC_006151.1 + 73056 0.67 0.422437
Target:  5'- gGGUGCGCGGGGuCCGcguGGCUgugGUCGAa- -3'
miRNA:   3'- -CCGCGUGCCCC-GGC---CCGAg--CGGCUgg -5'
29458 3' -65.5 NC_006151.1 + 17278 0.67 0.422437
Target:  5'- gGGCGgGCugauacggaGGGGCucccCGGGCUUcgaGCCGuCCg -3'
miRNA:   3'- -CCGCgUG---------CCCCG----GCCCGAG---CGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 97281 0.67 0.422437
Target:  5'- aGCGCcuCGGcGG-CGGGCguguugaGCCGGCCc -3'
miRNA:   3'- cCGCGu-GCC-CCgGCCCGag-----CGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 104824 0.67 0.422437
Target:  5'- cGGCGCGCGacGGccucGCCGcGGCggagGCgGACCa -3'
miRNA:   3'- -CCGCGUGC--CC----CGGC-CCGag--CGgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 72065 0.68 0.414275
Target:  5'- cGGCGCGCGccaccacccGcGCCGucaGCUCGCgGGCCu -3'
miRNA:   3'- -CCGCGUGC---------CcCGGCc--CGAGCGgCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.