Results 141 - 160 of 430 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29458 | 3' | -65.5 | NC_006151.1 | + | 78398 | 0.68 | 0.414275 |
Target: 5'- cGGC-CACGGcGGCucuCGGGCcgcgagCGCCGugGCCc -3' miRNA: 3'- -CCGcGUGCC-CCG---GCCCGa-----GCGGC--UGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 38269 | 0.68 | 0.414275 |
Target: 5'- cGGCcaACGuGGCCGcggcccGGCUCGCCGagGCCg -3' miRNA: 3'- -CCGcgUGCcCCGGC------CCGAGCGGC--UGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 89129 | 0.68 | 0.414275 |
Target: 5'- gGGCG-GCGGGaCCGGGggCGUCGAgaCCg -3' miRNA: 3'- -CCGCgUGCCCcGGCCCgaGCGGCU--GG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 99665 | 0.68 | 0.414275 |
Target: 5'- cGCGCGCagagccgcuGGGGCCu-GCgCGCCGACg -3' miRNA: 3'- cCGCGUG---------CCCCGGccCGaGCGGCUGg -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 122952 | 0.68 | 0.414275 |
Target: 5'- cGGCGcCGCGGGG--GGcGCggaCGCCGGCg -3' miRNA: 3'- -CCGC-GUGCCCCggCC-CGa--GCGGCUGg -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 5616 | 0.68 | 0.414275 |
Target: 5'- cGGCGgAgGGGgcgccgccgccGCCGGGCgccgaGaCCGGCCc -3' miRNA: 3'- -CCGCgUgCCC-----------CGGCCCGag---C-GGCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 41497 | 0.68 | 0.414275 |
Target: 5'- uGGCGCGagGGGaGCCaaugGGGCgggCGCCGcggagcggaaGCCc -3' miRNA: 3'- -CCGCGUg-CCC-CGG----CCCGa--GCGGC----------UGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 72065 | 0.68 | 0.414275 |
Target: 5'- cGGCGCGCGccaccacccGcGCCGucaGCUCGCgGGCCu -3' miRNA: 3'- -CCGCGUGC---------CcCGGCc--CGAGCGgCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 86602 | 0.68 | 0.414275 |
Target: 5'- uGGCGCGCGccGCCGaG-UCGCCgGACCg -3' miRNA: 3'- -CCGCGUGCccCGGCcCgAGCGG-CUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 46567 | 0.68 | 0.413464 |
Target: 5'- aGGCGCuccccgcGCaGGGCCcgacGGGCg-GCCGugCu -3' miRNA: 3'- -CCGCG-------UGcCCCGG----CCCGagCGGCugG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 21443 | 0.68 | 0.411845 |
Target: 5'- cGGCGUggGGuGGCCcccGGCggcguggucccgcgUCGCCGGCUc -3' miRNA: 3'- -CCGCGugCC-CCGGc--CCG--------------AGCGGCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 65959 | 0.68 | 0.406211 |
Target: 5'- --aGCGCGGccgcgucgucGaGCCGGucCUCGCCGGCCg -3' miRNA: 3'- ccgCGUGCC----------C-CGGCCc-GAGCGGCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 81273 | 0.68 | 0.406211 |
Target: 5'- aGCGCcucgGCGGGGaucuCGGGCgcggcgCGCgCGACg -3' miRNA: 3'- cCGCG----UGCCCCg---GCCCGa-----GCG-GCUGg -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 81451 | 0.68 | 0.406211 |
Target: 5'- cGGCGCACGGcGagaggacgucgaGCaggcugaaGGGCUCGUuccacgCGGCCg -3' miRNA: 3'- -CCGCGUGCC-C------------CGg-------CCCGAGCG------GCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 109551 | 0.68 | 0.406211 |
Target: 5'- aGGCGCcguggACGuGGCCcgagccgaGGGaCUCuGCCGGCCc -3' miRNA: 3'- -CCGCG-----UGCcCCGG--------CCC-GAG-CGGCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 58508 | 0.68 | 0.406211 |
Target: 5'- cGCGCGC-GGGCCGGcCUCGUccuCGuCCu -3' miRNA: 3'- cCGCGUGcCCCGGCCcGAGCG---GCuGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 65700 | 0.68 | 0.406211 |
Target: 5'- gGGCGCgggaucagguAgGGGGCCucgcgcGGCUgCGCgCGGCCc -3' miRNA: 3'- -CCGCG----------UgCCCCGGc-----CCGA-GCG-GCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 131733 | 0.68 | 0.406211 |
Target: 5'- aGGCGgggugGCGGGcCCGGGCgaGgCGACCg -3' miRNA: 3'- -CCGCg----UGCCCcGGCCCGagCgGCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 98420 | 0.68 | 0.406211 |
Target: 5'- gGGCaccuGCGaGGcGGCCGuGCUCGCCGAgaaCCu -3' miRNA: 3'- -CCG----CGUgCC-CCGGCcCGAGCGGCU---GG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 84756 | 0.68 | 0.40541 |
Target: 5'- cGGCGCGCGccGCCGaggaggcggacgcGGCgcgCGCCG-CCg -3' miRNA: 3'- -CCGCGUGCccCGGC-------------CCGa--GCGGCuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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