miRNA display CGI


Results 81 - 100 of 430 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29458 3' -65.5 NC_006151.1 + 23404 0.66 0.518019
Target:  5'- cGCGC-CaGcGCUGGuGgUCGCCGGCCg -3'
miRNA:   3'- cCGCGuGcCcCGGCC-CgAGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 23884 0.69 0.32363
Target:  5'- gGGCGaGCGgguucacGGGCUGGGCgucggUCGCgGGCCc -3'
miRNA:   3'- -CCGCgUGC-------CCCGGCCCG-----AGCGgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 26333 0.66 0.52716
Target:  5'- gGGCGaggcccgccuCACGGGGCggcggCGGGCcgCGUCGGg- -3'
miRNA:   3'- -CCGC----------GUGCCCCG-----GCCCGa-GCGGCUgg -5'
29458 3' -65.5 NC_006151.1 + 27023 0.7 0.278941
Target:  5'- gGGCcugccaGCAgGGGGCCGaGGggCGCUGGCg -3'
miRNA:   3'- -CCG------CGUgCCCCGGC-CCgaGCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 27187 0.7 0.278941
Target:  5'- gGGCGcCAgGGGGCCGcGCagaaggCGCCGggGCCc -3'
miRNA:   3'- -CCGC-GUgCCCCGGCcCGa-----GCGGC--UGG- -5'
29458 3' -65.5 NC_006151.1 + 27236 0.67 0.473347
Target:  5'- cGCGCAccuccuCGGGGUCGGGCgggggC-CCGuACUc -3'
miRNA:   3'- cCGCGU------GCCCCGGCCCGa----GcGGC-UGG- -5'
29458 3' -65.5 NC_006151.1 + 27323 0.7 0.281392
Target:  5'- cGGgGgACGGGGggcugcuccccgggaCCGGGgUCGUgGGCCg -3'
miRNA:   3'- -CCgCgUGCCCC---------------GGCCCgAGCGgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 27384 0.71 0.249726
Target:  5'- gGGCGagaacgGCGGGGagggcaCGGGCUCGUaccaguCGGCCc -3'
miRNA:   3'- -CCGCg-----UGCCCCg-----GCCCGAGCG------GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 27441 0.69 0.334025
Target:  5'- gGGCGCGgcggacgcgguggguCGGGGgCGGGCg-GUCGAgCg -3'
miRNA:   3'- -CCGCGU---------------GCCCCgGCCCGagCGGCUgG- -5'
29458 3' -65.5 NC_006151.1 + 27563 0.67 0.429865
Target:  5'- gGGCugGgACGGGGgCCGGGUgggugggcgaggcUCcccgacGCCGACCc -3'
miRNA:   3'- -CCG--CgUGCCCC-GGCCCG-------------AG------CGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 28096 0.72 0.208286
Target:  5'- gGGCGUccucgaGCGGGGCgCGGcucCUCGUCGGCUc -3'
miRNA:   3'- -CCGCG------UGCCCCG-GCCc--GAGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 28169 0.67 0.429865
Target:  5'- cGGCGUcguugggGCGGcgagugccgucGGCCGGGC-CGCCacgcACCc -3'
miRNA:   3'- -CCGCG-------UGCC-----------CCGGCCCGaGCGGc---UGG- -5'
29458 3' -65.5 NC_006151.1 + 28227 0.67 0.456023
Target:  5'- -cCGUcgAgGGGGCCGGGC-CGaCgGGCCc -3'
miRNA:   3'- ccGCG--UgCCCCGGCCCGaGC-GgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 28263 0.68 0.414275
Target:  5'- gGGCcucaCACGuGGGCCccGGGgaCGCgGGCCc -3'
miRNA:   3'- -CCGc---GUGC-CCCGG--CCCgaGCGgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 28813 0.68 0.393515
Target:  5'- gGGCGUccgggaccggccaauGCGGGccCCGGGgaCGCgGGCCc -3'
miRNA:   3'- -CCGCG---------------UGCCCc-GGCCCgaGCGgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 29069 0.69 0.338251
Target:  5'- cGGCGC-CGcGGGCCccgagacGGCcgCGgCGACCg -3'
miRNA:   3'- -CCGCGuGC-CCCGGc------CCGa-GCgGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 29207 0.7 0.285101
Target:  5'- gGGCGCgGCGGGGUgGGGaugggucacCGCCGggucgGCCg -3'
miRNA:   3'- -CCGCG-UGCCCCGgCCCga-------GCGGC-----UGG- -5'
29458 3' -65.5 NC_006151.1 + 29473 0.72 0.208286
Target:  5'- gGGCGCGCcGGGagaggaaaGGGCgCGCUGGCCu -3'
miRNA:   3'- -CCGCGUGcCCCgg------CCCGaGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 29678 0.69 0.352616
Target:  5'- gGGgGgGCGGGGUgGGGgaUCGCgGcACCg -3'
miRNA:   3'- -CCgCgUGCCCCGgCCCg-AGCGgC-UGG- -5'
29458 3' -65.5 NC_006151.1 + 30703 0.77 0.096949
Target:  5'- gGGUGU-CGGGGCCGGGUUCGCUcuguACCc -3'
miRNA:   3'- -CCGCGuGCCCCGGCCCGAGCGGc---UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.