miRNA display CGI


Results 101 - 120 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29458 3' -65.5 NC_006151.1 + 30905 0.66 0.499933
Target:  5'- aGCGCGCGGuagcGCCcgcGGGCggcccgCGCgGAUCg -3'
miRNA:   3'- cCGCGUGCCc---CGG---CCCGa-----GCGgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 31207 0.72 0.233439
Target:  5'- uGGCcCGCGuccaGGCCGGGCccccgGCCGGCCg -3'
miRNA:   3'- -CCGcGUGCc---CCGGCCCGag---CGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 31253 0.67 0.439046
Target:  5'- aGCGgGCGGGcgaGCCgGGGCcC-CCGGCCc -3'
miRNA:   3'- cCGCgUGCCC---CGG-CCCGaGcGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 31342 0.67 0.422437
Target:  5'- cGGCGC-CGuGGGCCcgaccccGGUccgCGCCGGCa -3'
miRNA:   3'- -CCGCGuGC-CCCGGc------CCGa--GCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 31672 0.77 0.101831
Target:  5'- gGGCGgAgGaaGGGCCGGGC-CGCCGAgCCg -3'
miRNA:   3'- -CCGCgUgC--CCCGGCCCGaGCGGCU-GG- -5'
29458 3' -65.5 NC_006151.1 + 31758 0.7 0.304223
Target:  5'- cGCGCcuGCGGcGG-CGGGCgcgCGCCGGgCg -3'
miRNA:   3'- cCGCG--UGCC-CCgGCCCGa--GCGGCUgG- -5'
29458 3' -65.5 NC_006151.1 + 33972 0.69 0.34323
Target:  5'- cGGCGCccgcGCGGGGacaCucuuucccccggagGGGCgucccggcgCGCCGGCCc -3'
miRNA:   3'- -CCGCG----UGCCCCg--G--------------CCCGa--------GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 35195 0.66 0.488328
Target:  5'- aGGCGCGCGGGagacgccuccgcgcGCCcauuggcccGGGCgaGCCGagaugGCCg -3'
miRNA:   3'- -CCGCGUGCCC--------------CGG---------CCCGagCGGC-----UGG- -5'
29458 3' -65.5 NC_006151.1 + 35328 0.66 0.482132
Target:  5'- uGGCGCccuCGGGGCCGGaCaUGCaaaguaGACg -3'
miRNA:   3'- -CCGCGu--GCCCCGGCCcGaGCGg-----CUGg -5'
29458 3' -65.5 NC_006151.1 + 36190 0.67 0.473347
Target:  5'- -cCGC-CGGGGCuCGGGCgagaUCGUgGugCu -3'
miRNA:   3'- ccGCGuGCCCCG-GCCCG----AGCGgCugG- -5'
29458 3' -65.5 NC_006151.1 + 36337 0.66 0.482132
Target:  5'- cGGCuC-CGGGcCCcGGC-CGCCGACCc -3'
miRNA:   3'- -CCGcGuGCCCcGGcCCGaGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 37150 0.66 0.488328
Target:  5'- cGCGC-CGGGccgccaccgucuccGCCGGcGCcCGCCGcgGCCc -3'
miRNA:   3'- cCGCGuGCCC--------------CGGCC-CGaGCGGC--UGG- -5'
29458 3' -65.5 NC_006151.1 + 38208 0.67 0.464642
Target:  5'- aGCGUggACGGGGCCcgcgcccgcGaGGC-CGCCugGACCu -3'
miRNA:   3'- cCGCG--UGCCCCGG---------C-CCGaGCGG--CUGG- -5'
29458 3' -65.5 NC_006151.1 + 38269 0.68 0.414275
Target:  5'- cGGCcaACGuGGCCGcggcccGGCUCGCCGagGCCg -3'
miRNA:   3'- -CCGcgUGCcCCGGC------CCGAGCGGC--UGG- -5'
29458 3' -65.5 NC_006151.1 + 38386 0.69 0.345379
Target:  5'- cGGCGC-CGGcGGCggCGGGCgccccCuCCGGCCu -3'
miRNA:   3'- -CCGCGuGCC-CCG--GCCCGa----GcGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 39156 0.69 0.367407
Target:  5'- cGCGcCGCGGcGGCCucucGGcgcuGCUCGCCG-CCu -3'
miRNA:   3'- cCGC-GUGCC-CCGG----CC----CGAGCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 39295 0.66 0.518019
Target:  5'- --gGCGCGGGaCCucGGCuUCGCCGGCg -3'
miRNA:   3'- ccgCGUGCCCcGGc-CCG-AGCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 39471 0.68 0.390382
Target:  5'- uGCGCuggccCGGGuGCCGcGaGCUCcGCgCGGCCg -3'
miRNA:   3'- cCGCGu----GCCC-CGGC-C-CGAG-CG-GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 39802 0.67 0.456023
Target:  5'- -cCGCugGGGGCuCGGcGCccCGCugCGGCCc -3'
miRNA:   3'- ccGCGugCCCCG-GCC-CGa-GCG--GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 39953 0.71 0.26694
Target:  5'- uGGUGCugacccCGGGcGCCgucgccgccgcGGGCgcccCGCCGGCCg -3'
miRNA:   3'- -CCGCGu-----GCCC-CGG-----------CCCGa---GCGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.