miRNA display CGI


Results 121 - 140 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29458 3' -65.5 NC_006151.1 + 40069 0.73 0.185508
Target:  5'- cGGCcCGCGGGGgccUCGGGCgccgggGCCGGCCc -3'
miRNA:   3'- -CCGcGUGCCCC---GGCCCGag----CGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 40567 0.71 0.261098
Target:  5'- cGGCG-GCGGcGGCCgcggcggaGGGCUCGgCGGCg -3'
miRNA:   3'- -CCGCgUGCC-CCGG--------CCCGAGCgGCUGg -5'
29458 3' -65.5 NC_006151.1 + 41497 0.68 0.414275
Target:  5'- uGGCGCGagGGGaGCCaaugGGGCgggCGCCGcggagcggaaGCCc -3'
miRNA:   3'- -CCGCGUg-CCC-CGG----CCCGa--GCGGC----------UGG- -5'
29458 3' -65.5 NC_006151.1 + 41558 0.69 0.331229
Target:  5'- cGGUGCGacggaaGGGGCa-GGCUCGgCGcGCCg -3'
miRNA:   3'- -CCGCGUg-----CCCCGgcCCGAGCgGC-UGG- -5'
29458 3' -65.5 NC_006151.1 + 43936 0.67 0.456023
Target:  5'- aGgGagaGGGGCCGGGggccCUCcCCGGCCg -3'
miRNA:   3'- cCgCgugCCCCGGCCC----GAGcGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 44678 0.77 0.10959
Target:  5'- uGCGCACGGcGGCC-GGCg-GCUGACCg -3'
miRNA:   3'- cCGCGUGCC-CCGGcCCGagCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 44844 0.7 0.278941
Target:  5'- gGGCGaGCGGGGUCguggaggggGGGCgcccucucUCGCcCGACCu -3'
miRNA:   3'- -CCGCgUGCCCCGG---------CCCG--------AGCG-GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 45412 0.66 0.508942
Target:  5'- uGGUGC-CGGuguguugugGGCCggGGGUUCGCgGGCg -3'
miRNA:   3'- -CCGCGuGCC---------CCGG--CCCGAGCGgCUGg -5'
29458 3' -65.5 NC_006151.1 + 46567 0.68 0.413464
Target:  5'- aGGCGCuccccgcGCaGGGCCcgacGGGCg-GCCGugCu -3'
miRNA:   3'- -CCGCG-------UGcCCCGG----CCCGagCGGCugG- -5'
29458 3' -65.5 NC_006151.1 + 46716 0.72 0.218054
Target:  5'- uGGUGCcucgGGGGCCGGG---GCCGGCCc -3'
miRNA:   3'- -CCGCGug--CCCCGGCCCgagCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 47276 0.66 0.499933
Target:  5'- cGGCGCgcagcguccGCGGcugcugugauGGgUGGGCggagCGCgGACCg -3'
miRNA:   3'- -CCGCG---------UGCC----------CCgGCCCGa---GCGgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 48137 0.66 0.518019
Target:  5'- cGGCGCugGGGGuuCCuGGCa--CCGGCg -3'
miRNA:   3'- -CCGCGugCCCC--GGcCCGagcGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 48673 0.77 0.101831
Target:  5'- cGGgGCA-GGGGCCGGGgcCUCgaaGCCGGCCc -3'
miRNA:   3'- -CCgCGUgCCCCGGCCC--GAG---CGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 49172 0.66 0.499933
Target:  5'- gGGCGCGCcgcgGGGuGCUGcuGCUgaacacgaCGCUGACCg -3'
miRNA:   3'- -CCGCGUG----CCC-CGGCc-CGA--------GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 49439 0.71 0.242556
Target:  5'- aGGCGaaCGCGuaccucguccagacGGGCCGGGCcccCGUCGACUg -3'
miRNA:   3'- -CCGC--GUGC--------------CCCGGCCCGa--GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 50381 0.66 0.518019
Target:  5'- gGGCGagACGcGGGCCccgcGGUccUCGCgCGGCCc -3'
miRNA:   3'- -CCGCg-UGC-CCCGGc---CCG--AGCG-GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 50437 0.67 0.464642
Target:  5'- uGCGCGcCGGcGGCCuGGGCacCGCCcGCg -3'
miRNA:   3'- cCGCGU-GCC-CCGG-CCCGa-GCGGcUGg -5'
29458 3' -65.5 NC_006151.1 + 51251 0.66 0.509847
Target:  5'- cGGCGCAgcuccaggucgagaaGGGcaucacgagcgcGCCcucggGGGC-CGCCGGCCa -3'
miRNA:   3'- -CCGCGUg--------------CCC------------CGG-----CCCGaGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 52371 0.76 0.115067
Target:  5'- cGGCGCGCccccGGGGCCcgcggGGGCggcgggCGCCG-CCg -3'
miRNA:   3'- -CCGCGUG----CCCCGG-----CCCGa-----GCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 54072 0.67 0.430695
Target:  5'- uGGCGCGCGGacccucuGCgGcGGCggCGgCGGCCa -3'
miRNA:   3'- -CCGCGUGCCc------CGgC-CCGa-GCgGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.