miRNA display CGI


Results 141 - 160 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29458 3' -65.5 NC_006151.1 + 54398 0.66 0.482132
Target:  5'- cGCGCGCGcGGCCucGGCgccgaggCGCUGGCg -3'
miRNA:   3'- cCGCGUGCcCCGGc-CCGa------GCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 54663 0.72 0.228211
Target:  5'- uGGacgaGCACGaccuGGCCGGGCaccugcgcgUCGCCGGCa -3'
miRNA:   3'- -CCg---CGUGCc---CCGGCCCG---------AGCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 54723 0.67 0.456023
Target:  5'- uGGaCGa--GGuGGCCGaGCUCGCCGagGCCa -3'
miRNA:   3'- -CC-GCgugCC-CCGGCcCGAGCGGC--UGG- -5'
29458 3' -65.5 NC_006151.1 + 55181 0.66 0.517109
Target:  5'- gGGCGCgcauccuggacaGCGuGGacacgucgcaGCCGGGCUucgggcaccacggCGCCGGCg -3'
miRNA:   3'- -CCGCG------------UGC-CC----------CGGCCCGA-------------GCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 55437 0.78 0.083599
Target:  5'- gGGCGCggACGGGaCCGGcGC-CGCCGGCCc -3'
miRNA:   3'- -CCGCG--UGCCCcGGCC-CGaGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 56548 0.67 0.44749
Target:  5'- gGGCcccuGCuCGGccuGCCGGGCgacgCGCCG-CCg -3'
miRNA:   3'- -CCG----CGuGCCc--CGGCCCGa---GCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 56913 0.74 0.175786
Target:  5'- cGGCGUguauguaaacacaaAUGGcGGCgGGGCgUCGCCGGCg -3'
miRNA:   3'- -CCGCG--------------UGCC-CCGgCCCG-AGCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 57174 0.68 0.374961
Target:  5'- cGGCGCGgcccagaaguCGGGGUCGuGGCgcgaggCGaaGGCCc -3'
miRNA:   3'- -CCGCGU----------GCCCCGGC-CCGa-----GCggCUGG- -5'
29458 3' -65.5 NC_006151.1 + 57239 0.72 0.208286
Target:  5'- cGGCGCGCGcGGCCucGGCgucCGCgCGGCCc -3'
miRNA:   3'- -CCGCGUGCcCCGGc-CCGa--GCG-GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 57329 0.66 0.530833
Target:  5'- uGCGCgACGGGaagccgacaaaguccGCgGGGCccucgCGCCG-CCg -3'
miRNA:   3'- cCGCG-UGCCC---------------CGgCCCGa----GCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 57500 0.72 0.223084
Target:  5'- cGCGCACGcgcucGGCCGcGGCggCGgCGGCCg -3'
miRNA:   3'- cCGCGUGCc----CCGGC-CCGa-GCgGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 57590 0.72 0.208286
Target:  5'- aGGCGCACGugaccaGGCCGGcCUCGgCCGcgGCCg -3'
miRNA:   3'- -CCGCGUGCc-----CCGGCCcGAGC-GGC--UGG- -5'
29458 3' -65.5 NC_006151.1 + 57842 0.73 0.203545
Target:  5'- gGGCGCACGGGuGCuccaCGGcGCUggucgcgcgcccCGCCGGCa -3'
miRNA:   3'- -CCGCGUGCCC-CG----GCC-CGA------------GCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 58282 0.67 0.44749
Target:  5'- cGCGCACgucaaaGGGGUCGcucaucucgccccGGCguuucagcggcggcgCGCCGGCCu -3'
miRNA:   3'- cCGCGUG------CCCCGGC-------------CCGa--------------GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 58508 0.68 0.406211
Target:  5'- cGCGCGC-GGGCCGGcCUCGUccuCGuCCu -3'
miRNA:   3'- cCGCGUGcCCCGGCCcGAGCG---GCuGG- -5'
29458 3' -65.5 NC_006151.1 + 58659 0.67 0.456023
Target:  5'- aGgGCGCGGcGCaGGGC-CGCCauGACCg -3'
miRNA:   3'- cCgCGUGCCcCGgCCCGaGCGG--CUGG- -5'
29458 3' -65.5 NC_006151.1 + 59212 0.67 0.44749
Target:  5'- -aCGCGCGuGGGCCccGGGaacgUCuGCCGGCUg -3'
miRNA:   3'- ccGCGUGC-CCCGG--CCCg---AG-CGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 59360 0.71 0.244195
Target:  5'- cGCGCACGGGGCgccgCGcGGCcgUCGUCGcguCCa -3'
miRNA:   3'- cCGCGUGCCCCG----GC-CCG--AGCGGCu--GG- -5'
29458 3' -65.5 NC_006151.1 + 59546 0.68 0.38262
Target:  5'- aGCGCGCGGGcacguugaaGUCGGGggccagCGCCG-CCa -3'
miRNA:   3'- cCGCGUGCCC---------CGGCCCga----GCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 60195 0.74 0.172919
Target:  5'- aGCaGCACGGGcGUgaagaUGGGCUCGCCGcgcgcGCCg -3'
miRNA:   3'- cCG-CGUGCCC-CG-----GCCCGAGCGGC-----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.