miRNA display CGI


Results 61 - 80 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29458 3' -65.5 NC_006151.1 + 125363 0.67 0.430695
Target:  5'- aGGCGCACGuGaacgacauGCUGGGC-CGCaucgCGGCCg -3'
miRNA:   3'- -CCGCGUGC-Cc-------CGGCCCGaGCG----GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 125290 0.69 0.334025
Target:  5'- --gGCACGGGGCaccugcgcaucaccaCGGGCUCGgCGGa- -3'
miRNA:   3'- ccgCGUGCCCCG---------------GCCCGAGCgGCUgg -5'
29458 3' -65.5 NC_006151.1 + 125242 0.72 0.218054
Target:  5'- cGGCGCucccccggcccgGCGGGGacgcCCGaGC-CGCCGGCCg -3'
miRNA:   3'- -CCGCG------------UGCCCC----GGCcCGaGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 124062 0.67 0.439046
Target:  5'- uGGaCGCGCGGacGGCCGuGCgCGCggccgCGACCg -3'
miRNA:   3'- -CC-GCGUGCC--CCGGCcCGaGCG-----GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 123910 0.75 0.146472
Target:  5'- cGGCGCggcggccgugACGcGGGCCGccucGGcCUCGCCGACg -3'
miRNA:   3'- -CCGCG----------UGC-CCCGGC----CC-GAGCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 123764 0.68 0.374961
Target:  5'- uGGCGCGggcccCGGGGgcaucggcCCGGGCaccacggcggUGCUGGCCu -3'
miRNA:   3'- -CCGCGU-----GCCCC--------GGCCCGa---------GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 123023 0.69 0.352616
Target:  5'- cGGCGgACGccguGGCgUGGGCggaccUGCCGGCCg -3'
miRNA:   3'- -CCGCgUGCc---CCG-GCCCGa----GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 122952 0.68 0.414275
Target:  5'- cGGCGcCGCGGGG--GGcGCggaCGCCGGCg -3'
miRNA:   3'- -CCGC-GUGCCCCggCC-CGa--GCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 122685 0.73 0.193893
Target:  5'- uGCGCGCGGcGGCCguGGaGCUCGCgcucuucgggcggCGGCCc -3'
miRNA:   3'- cCGCGUGCC-CCGG--CC-CGAGCG-------------GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 122473 0.73 0.203545
Target:  5'- gGGCGC-CGaGGCCGGGgaCGCgGGCg -3'
miRNA:   3'- -CCGCGuGCcCCGGCCCgaGCGgCUGg -5'
29458 3' -65.5 NC_006151.1 + 122385 0.74 0.153627
Target:  5'- aGGCGCGcCGcGGGCgcgcgcuggCGGcGCUCGCCG-CCg -3'
miRNA:   3'- -CCGCGU-GC-CCCG---------GCC-CGAGCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 122163 0.71 0.272887
Target:  5'- cGCGCACGaucGGCggCGGGCUCGUgGugCc -3'
miRNA:   3'- cCGCGUGCc--CCG--GCCCGAGCGgCugG- -5'
29458 3' -65.5 NC_006151.1 + 121933 0.73 0.203545
Target:  5'- cGUGCugGGGGCgCuGGC-CGCCG-CCg -3'
miRNA:   3'- cCGCGugCCCCG-GcCCGaGCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 121412 0.78 0.085696
Target:  5'- cGGCGCggGCGGGgacgucGCgGGGCUcgCGCCGGCCu -3'
miRNA:   3'- -CCGCG--UGCCC------CGgCCCGA--GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 121271 0.68 0.374961
Target:  5'- cGCGCugGcGGaGaucaaCGGGCgcgugGCCGACCg -3'
miRNA:   3'- cCGCGugC-CC-Cg----GCCCGag---CGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 121088 0.74 0.157323
Target:  5'- gGGCG-GCGGcGCCGGGCU-GCaCGACCa -3'
miRNA:   3'- -CCGCgUGCCcCGGCCCGAgCG-GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 120339 0.8 0.065164
Target:  5'- cGCGCGCGcccgcguGGCCGGGCUCGCgGGCg -3'
miRNA:   3'- cCGCGUGCc------CCGGCCCGAGCGgCUGg -5'
29458 3' -65.5 NC_006151.1 + 119762 0.66 0.499933
Target:  5'- uGGCGgACGuGGCCGGcGCgCGCauCGGCg -3'
miRNA:   3'- -CCGCgUGCcCCGGCC-CGaGCG--GCUGg -5'
29458 3' -65.5 NC_006151.1 + 119439 0.69 0.352616
Target:  5'- cGgGCACGuucguGGGCCGcGGCgacguggaCGCCGugCg -3'
miRNA:   3'- cCgCGUGC-----CCCGGC-CCGa-------GCGGCugG- -5'
29458 3' -65.5 NC_006151.1 + 119184 0.66 0.490105
Target:  5'- uGGaCGaCGCGGGcGCCGccgacgcgcgcaaGGagggCGCCGGCCc -3'
miRNA:   3'- -CC-GC-GUGCCC-CGGC-------------CCga--GCGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.