miRNA display CGI


Results 81 - 100 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29458 3' -65.5 NC_006151.1 + 118880 0.72 0.233439
Target:  5'- cGGCgGCGCGGcGGCgaCGcGGC-CGCCGGCg -3'
miRNA:   3'- -CCG-CGUGCC-CCG--GC-CCGaGCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 118729 0.67 0.422437
Target:  5'- uGCuGCACGGcuacguGCUGGGCcCGgCGGCCg -3'
miRNA:   3'- cCG-CGUGCCc-----CGGCCCGaGCgGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 118446 0.7 0.285101
Target:  5'- uGCGCGCGGcucGGCCuGGC-CGCgGACg -3'
miRNA:   3'- cCGCGUGCC---CCGGcCCGaGCGgCUGg -5'
29458 3' -65.5 NC_006151.1 + 118226 0.72 0.218054
Target:  5'- gGGCGCcCGGaccaCCGGGCUCGgCGGCg -3'
miRNA:   3'- -CCGCGuGCCcc--GGCCCGAGCgGCUGg -5'
29458 3' -65.5 NC_006151.1 + 118171 0.73 0.181224
Target:  5'- uGGUGCGCGGccugaccgucgaGGCCGGcUUCGCCGGgCa -3'
miRNA:   3'- -CCGCGUGCC------------CCGGCCcGAGCGGCUgG- -5'
29458 3' -65.5 NC_006151.1 + 118059 0.67 0.44749
Target:  5'- cGCGcCGCGccGCUGGGCUacguguacgugaCGCCGAUCg -3'
miRNA:   3'- cCGC-GUGCccCGGCCCGA------------GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 117793 0.73 0.198898
Target:  5'- gGGCGCcacgcccgGCGGGGCgGGGCcccaCGCUuuaaGACCc -3'
miRNA:   3'- -CCGCG--------UGCCCCGgCCCGa---GCGG----CUGG- -5'
29458 3' -65.5 NC_006151.1 + 117295 0.66 0.482132
Target:  5'- cGCGCGCGaGcuGCuCGGcGCUCGCCacGCCg -3'
miRNA:   3'- cCGCGUGC-Cc-CG-GCC-CGAGCGGc-UGG- -5'
29458 3' -65.5 NC_006151.1 + 117235 0.7 0.291367
Target:  5'- cGCGCGCGuccacgucggcGGGCCcgaggcgcGGGCcgCGCgCGGCCg -3'
miRNA:   3'- cCGCGUGC-----------CCCGG--------CCCGa-GCG-GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 116854 0.7 0.278941
Target:  5'- cGGCG-GCGGGGaaGGccGCgucgUCGCCGGCCu -3'
miRNA:   3'- -CCGCgUGCCCCggCC--CG----AGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 115548 0.69 0.359219
Target:  5'- cGCGCACGGcguacucgcccgcGGgCGGGCgCGCgGGCa -3'
miRNA:   3'- cCGCGUGCC-------------CCgGCCCGaGCGgCUGg -5'
29458 3' -65.5 NC_006151.1 + 115101 0.69 0.324316
Target:  5'- cGGC-CACGuccaGGCCGGcGC-CGCCGGCg -3'
miRNA:   3'- -CCGcGUGCc---CCGGCC-CGaGCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 114914 0.71 0.249726
Target:  5'- gGGCGCACGGccCCGGcGUcgCGCuCGGCCu -3'
miRNA:   3'- -CCGCGUGCCccGGCC-CGa-GCG-GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 114433 0.66 0.52716
Target:  5'- cGCGUGCuGGaccGCCugcucgGGGCcugCGCCGGCCa -3'
miRNA:   3'- cCGCGUGcCC---CGG------CCCGa--GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 113414 0.7 0.31751
Target:  5'- cGCGCGCGcacuGGCUGGcGCUgCGCCGcuuCCg -3'
miRNA:   3'- cCGCGUGCc---CCGGCC-CGA-GCGGCu--GG- -5'
29458 3' -65.5 NC_006151.1 + 113126 0.75 0.143009
Target:  5'- cGGaCGcCGCcGGGCCcGGCUaCGCCGACCu -3'
miRNA:   3'- -CC-GC-GUGcCCCGGcCCGA-GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 113100 0.66 0.482132
Target:  5'- cGC-CACcgGGGGCgGGGC-CGCgGACg -3'
miRNA:   3'- cCGcGUG--CCCCGgCCCGaGCGgCUGg -5'
29458 3' -65.5 NC_006151.1 + 112032 0.67 0.456023
Target:  5'- cGGCGggaGCuGGGGCCggcGGGCgggCGgCGGCg -3'
miRNA:   3'- -CCGCg--UG-CCCCGG---CCCGa--GCgGCUGg -5'
29458 3' -65.5 NC_006151.1 + 111858 0.72 0.223084
Target:  5'- gGGCGCuCGGGGUCGcaGGCcgucUCGCCGucGCUg -3'
miRNA:   3'- -CCGCGuGCCCCGGC--CCG----AGCGGC--UGG- -5'
29458 3' -65.5 NC_006151.1 + 111737 0.67 0.430695
Target:  5'- cGCGCACguaGGGGUCgcaGGGgaCGUgGGCCc -3'
miRNA:   3'- cCGCGUG---CCCCGG---CCCgaGCGgCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.