miRNA display CGI


Results 101 - 120 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29458 3' -65.5 NC_006151.1 + 111360 0.84 0.031298
Target:  5'- gGGCGCGCGGGGCgaGGGCcccUCGCCGucgucGCCg -3'
miRNA:   3'- -CCGCGUGCCCCGg-CCCG---AGCGGC-----UGG- -5'
29458 3' -65.5 NC_006151.1 + 110923 0.67 0.430695
Target:  5'- aGGUuCACGaGGGCCaGGGaggUGCCGAUa -3'
miRNA:   3'- -CCGcGUGC-CCCGG-CCCga-GCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 110789 0.7 0.31549
Target:  5'- -uCGCGCGGGGCUagggcggggggcgaGGGCagaagguccgcuUCagGCCGACCg -3'
miRNA:   3'- ccGCGUGCCCCGG--------------CCCG------------AG--CGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 110144 0.67 0.473347
Target:  5'- uGCGCGCcaccggacucGGGGCCcuGGCccugcucaUCGCCGcguGCCg -3'
miRNA:   3'- cCGCGUG----------CCCCGGc-CCG--------AGCGGC---UGG- -5'
29458 3' -65.5 NC_006151.1 + 109551 0.68 0.406211
Target:  5'- aGGCGCcguggACGuGGCCcgagccgaGGGaCUCuGCCGGCCc -3'
miRNA:   3'- -CCGCG-----UGCcCCGG--------CCC-GAG-CGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 109473 0.67 0.470727
Target:  5'- aGCgGCACGGGGagcccCCGcGGCUcauguucacaccucCGCCGcuGCCg -3'
miRNA:   3'- cCG-CGUGCCCC-----GGC-CCGA--------------GCGGC--UGG- -5'
29458 3' -65.5 NC_006151.1 + 107024 0.68 0.398246
Target:  5'- cGGCGCugaucGCGGcgcggccccuGGCCGGcGa--GCCGGCCu -3'
miRNA:   3'- -CCGCG-----UGCC----------CCGGCC-CgagCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 106793 0.67 0.473347
Target:  5'- uGGC-CGCGGcGG-CGGuGCUCGUCGggGCCc -3'
miRNA:   3'- -CCGcGUGCC-CCgGCC-CGAGCGGC--UGG- -5'
29458 3' -65.5 NC_006151.1 + 106722 0.71 0.243648
Target:  5'- uGgGCACGGGcaugacguucaccGUcaCGGGCUCGCCG-CCg -3'
miRNA:   3'- cCgCGUGCCC-------------CG--GCCCGAGCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 106680 0.76 0.117901
Target:  5'- cGGCGCuCGGcGcGCCGGGCgcCGgCGACCu -3'
miRNA:   3'- -CCGCGuGCC-C-CGGCCCGa-GCgGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 106509 0.81 0.056055
Target:  5'- uGGCGCGCGccguGCCGGGCgCGCUGGCCa -3'
miRNA:   3'- -CCGCGUGCcc--CGGCCCGaGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 106398 0.66 0.488328
Target:  5'- uGCGCgACGGGcaggcgcuguucacGCUGcGCgUCGCCGACUg -3'
miRNA:   3'- cCGCG-UGCCC--------------CGGCcCG-AGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 106236 0.69 0.324316
Target:  5'- uGGC-CGCGGuGGCCGGcGa--GCCGACg -3'
miRNA:   3'- -CCGcGUGCC-CCGGCC-CgagCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 106035 0.68 0.398246
Target:  5'- aGGCGCGCGaca-CGGGCuUCGCC-ACCu -3'
miRNA:   3'- -CCGCGUGCcccgGCCCG-AGCGGcUGG- -5'
29458 3' -65.5 NC_006151.1 + 105792 0.66 0.482132
Target:  5'- cGGUGCGCGaGGCgCGGaGCgaCGCgGACg -3'
miRNA:   3'- -CCGCGUGCcCCG-GCC-CGa-GCGgCUGg -5'
29458 3' -65.5 NC_006151.1 + 105686 0.74 0.161098
Target:  5'- cGGCgGCGCGGGGCCGacgccGGCgcgGCCGcgcGCCu -3'
miRNA:   3'- -CCG-CGUGCCCCGGC-----CCGag-CGGC---UGG- -5'
29458 3' -65.5 NC_006151.1 + 105451 0.74 0.170495
Target:  5'- cGGCGCGCgccGGGGCCcuGGGCgacuucuuccgcgaCGCCGguGCCg -3'
miRNA:   3'- -CCGCGUG---CCCCGG--CCCGa-------------GCGGC--UGG- -5'
29458 3' -65.5 NC_006151.1 + 105285 0.68 0.398246
Target:  5'- gGGCGCGCGcGcGGCCGcGCcggCGCCu-CCg -3'
miRNA:   3'- -CCGCGUGC-C-CCGGCcCGa--GCGGcuGG- -5'
29458 3' -65.5 NC_006151.1 + 104917 0.69 0.367407
Target:  5'- cGGCGCgcgaccgcgACGGGGCCcucGaGCUgGCCaACCu -3'
miRNA:   3'- -CCGCG---------UGCCCCGGc--C-CGAgCGGcUGG- -5'
29458 3' -65.5 NC_006151.1 + 104824 0.67 0.422437
Target:  5'- cGGCGCGCGacGGccucGCCGcGGCggagGCgGACCa -3'
miRNA:   3'- -CCGCGUGC--CC----CGGC-CCGag--CGgCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.