miRNA display CGI


Results 121 - 140 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29458 3' -65.5 NC_006151.1 + 104575 0.7 0.285101
Target:  5'- cGGCGCGCGGacgugcugcaGGCCGGcggcagccGCggCGCCGAg- -3'
miRNA:   3'- -CCGCGUGCC----------CCGGCC--------CGa-GCGGCUgg -5'
29458 3' -65.5 NC_006151.1 + 104364 0.66 0.499933
Target:  5'- cGGCGCcgacACGGagccgcucucgcGGCUGGcccGCaUCGCCGGCg -3'
miRNA:   3'- -CCGCG----UGCC------------CCGGCC---CG-AGCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 104057 0.76 0.120799
Target:  5'- gGGCGCGCGcGGCCGacgcGGCgcugCGCCGcGCCg -3'
miRNA:   3'- -CCGCGUGCcCCGGC----CCGa---GCGGC-UGG- -5'
29458 3' -65.5 NC_006151.1 + 103809 0.66 0.508942
Target:  5'- cGCGCuguCGGcGGCCGuGGC--GgCGGCCg -3'
miRNA:   3'- cCGCGu--GCC-CCGGC-CCGagCgGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 103677 0.71 0.272887
Target:  5'- cGGCGCGCGcGGCgGGGgugcugcgCGCCG-CCg -3'
miRNA:   3'- -CCGCGUGCcCCGgCCCga------GCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 103537 0.73 0.181224
Target:  5'- cGGCGCGCugguGGGcGCCGGGCa-GCCGcUCg -3'
miRNA:   3'- -CCGCGUG----CCC-CGGCCCGagCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 103298 0.66 0.499933
Target:  5'- cGCGCGCGGcucGCgCGGcGCgaCGCCGAgCu -3'
miRNA:   3'- cCGCGUGCCc--CG-GCC-CGa-GCGGCUgG- -5'
29458 3' -65.5 NC_006151.1 + 103134 0.68 0.389601
Target:  5'- aGCGCGCGGccaagcgcgccucGGCCGa---CGCCGACCu -3'
miRNA:   3'- cCGCGUGCC-------------CCGGCccgaGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 103029 0.74 0.177028
Target:  5'- aGCGCcuCGGGGCCuGGUUCGCgcugcUGGCCg -3'
miRNA:   3'- cCGCGu-GCCCCGGcCCGAGCG-----GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 102692 0.66 0.508942
Target:  5'- gGGgGCGCccGGCgCGGGCg-GCgCGGCCg -3'
miRNA:   3'- -CCgCGUGccCCG-GCCCGagCG-GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 102553 0.66 0.518019
Target:  5'- cGCGCGCGcGGGCCcuGUUUGCgCGcGCCc -3'
miRNA:   3'- cCGCGUGC-CCCGGccCGAGCG-GC-UGG- -5'
29458 3' -65.5 NC_006151.1 + 102272 0.66 0.52716
Target:  5'- gGGCGCGCu--GCCGGaGCgCGgcCCGGCCg -3'
miRNA:   3'- -CCGCGUGcccCGGCC-CGaGC--GGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 102141 0.72 0.238766
Target:  5'- gGGCGCGcCGGGcuGCUGGaGCgcuUCGCCGAgCu -3'
miRNA:   3'- -CCGCGU-GCCC--CGGCC-CG---AGCGGCUgG- -5'
29458 3' -65.5 NC_006151.1 + 101766 0.71 0.260519
Target:  5'- cGCGCcgccgacGCGGGGCCccgGGGCcaucccguccUCGCCGucGCCc -3'
miRNA:   3'- cCGCG-------UGCCCCGG---CCCG----------AGCGGC--UGG- -5'
29458 3' -65.5 NC_006151.1 + 101571 0.69 0.324316
Target:  5'- cGCGCACGucG-CGGGCUaCGCCG-CCa -3'
miRNA:   3'- cCGCGUGCccCgGCCCGA-GCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 101454 0.69 0.359958
Target:  5'- cGGCGC-CGuGGGCCuGGGCcucuacCGCCGcgGCg -3'
miRNA:   3'- -CCGCGuGC-CCCGG-CCCGa-----GCGGC--UGg -5'
29458 3' -65.5 NC_006151.1 + 101390 0.67 0.439046
Target:  5'- cGGCGCGCGccuucuucgacGGCCucuGGGCgcagcgCGCCGAguCCu -3'
miRNA:   3'- -CCGCGUGCc----------CCGG---CCCGa-----GCGGCU--GG- -5'
29458 3' -65.5 NC_006151.1 + 101222 0.69 0.331229
Target:  5'- aGGCGUggACGGGGCCcggcggGGGCaugugCGCC-AUCa -3'
miRNA:   3'- -CCGCG--UGCCCCGG------CCCGa----GCGGcUGG- -5'
29458 3' -65.5 NC_006151.1 + 100715 0.66 0.508942
Target:  5'- aGGCGCGCGaGGaGCa-GGCgccgcccgCGCCcGCCu -3'
miRNA:   3'- -CCGCGUGC-CC-CGgcCCGa-------GCGGcUGG- -5'
29458 3' -65.5 NC_006151.1 + 100619 0.7 0.304223
Target:  5'- uGGCGCGCuGGGaccuggucagcGCCGcGCUgCGCCGcGCCg -3'
miRNA:   3'- -CCGCGUG-CCC-----------CGGCcCGA-GCGGC-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.