miRNA display CGI


Results 101 - 120 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29458 3' -65.5 NC_006151.1 + 49172 0.66 0.499933
Target:  5'- gGGCGCGCcgcgGGGuGCUGcuGCUgaacacgaCGCUGACCg -3'
miRNA:   3'- -CCGCGUG----CCC-CGGCc-CGA--------GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 47276 0.66 0.499933
Target:  5'- cGGCGCgcagcguccGCGGcugcugugauGGgUGGGCggagCGCgGACCg -3'
miRNA:   3'- -CCGCG---------UGCC----------CCgGCCCGa---GCGgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 30905 0.66 0.499933
Target:  5'- aGCGCGCGGuagcGCCcgcGGGCggcccgCGCgGAUCg -3'
miRNA:   3'- cCGCGUGCCc---CGG---CCCGa-----GCGgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 75022 0.66 0.490995
Target:  5'- uGGgGCACGGcgaagGGcCCGGGgaCGUCcACCu -3'
miRNA:   3'- -CCgCGUGCC-----CC-GGCCCgaGCGGcUGG- -5'
29458 3' -65.5 NC_006151.1 + 73996 0.66 0.490995
Target:  5'- cGGCGCcacCGaGGCCaggagGGGCgucgugCGCuCGGCCa -3'
miRNA:   3'- -CCGCGu--GCcCCGG-----CCCGa-----GCG-GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 103298 0.66 0.499933
Target:  5'- cGCGCGCGGcucGCgCGGcGCgaCGCCGAgCu -3'
miRNA:   3'- cCGCGUGCCc--CG-GCC-CGa-GCGGCUgG- -5'
29458 3' -65.5 NC_006151.1 + 89678 0.66 0.508038
Target:  5'- gGGCGCacaaagagcgagACGGccGCCGcguccaggaacccGGCggCGCCGGCCg -3'
miRNA:   3'- -CCGCG------------UGCCc-CGGC-------------CCGa-GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 90026 0.66 0.517109
Target:  5'- uGGCGCACGugacGGCCagccccaGGGCgaUGCCGAg- -3'
miRNA:   3'- -CCGCGUGCc---CCGG-------CCCGa-GCGGCUgg -5'
29458 3' -65.5 NC_006151.1 + 55181 0.66 0.517109
Target:  5'- gGGCGCgcauccuggacaGCGuGGacacgucgcaGCCGGGCUucgggcaccacggCGCCGGCg -3'
miRNA:   3'- -CCGCG------------UGC-CC----------CGGCCCGA-------------GCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 51251 0.66 0.509847
Target:  5'- cGGCGCAgcuccaggucgagaaGGGcaucacgagcgcGCCcucggGGGC-CGCCGGCCa -3'
miRNA:   3'- -CCGCGUg--------------CCC------------CGG-----CCCGaGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 125646 0.66 0.508942
Target:  5'- gGGCGUgauCGaGGGCCa-GCUCGgCGACg -3'
miRNA:   3'- -CCGCGu--GC-CCCGGccCGAGCgGCUGg -5'
29458 3' -65.5 NC_006151.1 + 103809 0.66 0.508942
Target:  5'- cGCGCuguCGGcGGCCGuGGC--GgCGGCCg -3'
miRNA:   3'- cCGCGu--GCC-CCGGC-CCGagCgGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 82675 0.66 0.508942
Target:  5'- cGGCGCGCcGcGGGCgaGGGCggcgGCCcccgcgagGGCCa -3'
miRNA:   3'- -CCGCGUG-C-CCCGg-CCCGag--CGG--------CUGG- -5'
29458 3' -65.5 NC_006151.1 + 136907 0.66 0.508942
Target:  5'- gGGUGCGCGcccccgacgaGGagcagcagcaGCCGGGCgccgacggCGCCGuCCu -3'
miRNA:   3'- -CCGCGUGC----------CC----------CGGCCCGa-------GCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 102692 0.66 0.508942
Target:  5'- gGGgGCGCccGGCgCGGGCg-GCgCGGCCg -3'
miRNA:   3'- -CCgCGUGccCCG-GCCCGagCG-GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 100715 0.66 0.508942
Target:  5'- aGGCGCGCGaGGaGCa-GGCgccgcccgCGCCcGCCu -3'
miRNA:   3'- -CCGCGUGC-CC-CGgcCCGa-------GCGGcUGG- -5'
29458 3' -65.5 NC_006151.1 + 84636 0.66 0.508942
Target:  5'- cGGCGCugGacaacgccauGGCCgcGGGCgcgCGCCucgaGGCCg -3'
miRNA:   3'- -CCGCGugCc---------CCGG--CCCGa--GCGG----CUGG- -5'
29458 3' -65.5 NC_006151.1 + 45412 0.66 0.508942
Target:  5'- uGGUGC-CGGuguguugugGGCCggGGGUUCGCgGGCg -3'
miRNA:   3'- -CCGCGuGCC---------CCGG--CCCGAGCGgCUGg -5'
29458 3' -65.5 NC_006151.1 + 3532 0.66 0.508942
Target:  5'- aGCaGCGCGGGaGCgGGGUccggaGCgGGCCc -3'
miRNA:   3'- cCG-CGUGCCC-CGgCCCGag---CGgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 94219 0.66 0.508942
Target:  5'- aGGCGaagaggaaGCGGuagaacucGaGCuCGGGCUCGCUGAgCg -3'
miRNA:   3'- -CCGCg-------UGCC--------C-CG-GCCCGAGCGGCUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.