Results 141 - 160 of 430 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29458 | 3' | -65.5 | NC_006151.1 | + | 66862 | 0.66 | 0.490995 |
Target: 5'- aGgGC-CGGGGCggcgcgaaGGGCgCGCcCGGCCc -3' miRNA: 3'- cCgCGuGCCCCGg-------CCCGaGCG-GCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 69646 | 0.66 | 0.490995 |
Target: 5'- cGCGUGCGGcgccGCCGGG-UCGUCGaaGCCc -3' miRNA: 3'- cCGCGUGCCc---CGGCCCgAGCGGC--UGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 132757 | 0.66 | 0.499933 |
Target: 5'- uGGCGCccaGCaGcGCCGGGCccUCGUCGaagGCCa -3' miRNA: 3'- -CCGCG---UGcCcCGGCCCG--AGCGGC---UGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 137477 | 0.66 | 0.499933 |
Target: 5'- aGGCGCccUGGGacgacgacGCCGccCUCGCCGACUu -3' miRNA: 3'- -CCGCGu-GCCC--------CGGCccGAGCGGCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 20448 | 0.66 | 0.499933 |
Target: 5'- cGGa--GCGGGGCUcggGGGUggCGCCGGuCCc -3' miRNA: 3'- -CCgcgUGCCCCGG---CCCGa-GCGGCU-GG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 103298 | 0.66 | 0.499933 |
Target: 5'- cGCGCGCGGcucGCgCGGcGCgaCGCCGAgCu -3' miRNA: 3'- cCGCGUGCCc--CG-GCC-CGa-GCGGCUgG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 89678 | 0.66 | 0.508038 |
Target: 5'- gGGCGCacaaagagcgagACGGccGCCGcguccaggaacccGGCggCGCCGGCCg -3' miRNA: 3'- -CCGCG------------UGCCc-CGGC-------------CCGa-GCGGCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 94219 | 0.66 | 0.508942 |
Target: 5'- aGGCGaagaggaaGCGGuagaacucGaGCuCGGGCUCGCUGAgCg -3' miRNA: 3'- -CCGCg-------UGCC--------C-CG-GCCCGAGCGGCUgG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 3532 | 0.66 | 0.508942 |
Target: 5'- aGCaGCGCGGGaGCgGGGUccggaGCgGGCCc -3' miRNA: 3'- cCG-CGUGCCC-CGgCCCGag---CGgCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 45412 | 0.66 | 0.508942 |
Target: 5'- uGGUGC-CGGuguguugugGGCCggGGGUUCGCgGGCg -3' miRNA: 3'- -CCGCGuGCC---------CCGG--CCCGAGCGgCUGg -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 126370 | 0.66 | 0.499933 |
Target: 5'- aGGCGCgcaagaagaacaGCGGGcCCGcGCU-GCUGGCCa -3' miRNA: 3'- -CCGCG------------UGCCCcGGCcCGAgCGGCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 119762 | 0.66 | 0.499933 |
Target: 5'- uGGCGgACGuGGCCGGcGCgCGCauCGGCg -3' miRNA: 3'- -CCGCgUGCcCCGGCC-CGaGCG--GCUGg -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 73996 | 0.66 | 0.490995 |
Target: 5'- cGGCGCcacCGaGGCCaggagGGGCgucgugCGCuCGGCCa -3' miRNA: 3'- -CCGCGu--GCcCCGG-----CCCGa-----GCG-GCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 75022 | 0.66 | 0.490995 |
Target: 5'- uGGgGCACGGcgaagGGcCCGGGgaCGUCcACCu -3' miRNA: 3'- -CCgCGUGCC-----CC-GGCCCgaGCGGcUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 30905 | 0.66 | 0.499933 |
Target: 5'- aGCGCGCGGuagcGCCcgcGGGCggcccgCGCgGAUCg -3' miRNA: 3'- cCGCGUGCCc---CGG---CCCGa-----GCGgCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 47276 | 0.66 | 0.499933 |
Target: 5'- cGGCGCgcagcguccGCGGcugcugugauGGgUGGGCggagCGCgGACCg -3' miRNA: 3'- -CCGCG---------UGCC----------CCgGCCCGa---GCGgCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 49172 | 0.66 | 0.499933 |
Target: 5'- gGGCGCGCcgcgGGGuGCUGcuGCUgaacacgaCGCUGACCg -3' miRNA: 3'- -CCGCGUG----CCC-CGGCc-CGA--------GCGGCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 84823 | 0.66 | 0.499933 |
Target: 5'- cGCGgACGGGGCCGcgaGGUgcagaUCGCCa--- -3' miRNA: 3'- cCGCgUGCCCCGGC---CCG-----AGCGGcugg -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 90760 | 0.66 | 0.499933 |
Target: 5'- cGGCggGCACGGuGGCgGGG-UCGgCGGgCg -3' miRNA: 3'- -CCG--CGUGCC-CCGgCCCgAGCgGCUgG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 104364 | 0.66 | 0.499933 |
Target: 5'- cGGCGCcgacACGGagccgcucucgcGGCUGGcccGCaUCGCCGGCg -3' miRNA: 3'- -CCGCG----UGCC------------CCGGCC---CG-AGCGGCUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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