Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29458 | 5' | -53.1 | NC_006151.1 | + | 2883 | 0.76 | 0.538566 |
Target: 5'- cGGGC-C--AGUCCUCGAugGUGUCCa -3' miRNA: 3'- -CUCGaGuuUCAGGAGCUugCGCAGGc -5' |
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29458 | 5' | -53.1 | NC_006151.1 | + | 4362 | 0.66 | 0.961621 |
Target: 5'- cGGGCgCAGAGggCCUCGAcggucgccuccccgGCGCGggggUCCGc -3' miRNA: 3'- -CUCGaGUUUCa-GGAGCU--------------UGCGC----AGGC- -5' |
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29458 | 5' | -53.1 | NC_006151.1 | + | 6535 | 0.68 | 0.932507 |
Target: 5'- aGAGC-CGGAGUCUUCaGAGucCGCG-CCGg -3' miRNA: 3'- -CUCGaGUUUCAGGAG-CUU--GCGCaGGC- -5' |
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29458 | 5' | -53.1 | NC_006151.1 | + | 14372 | 0.67 | 0.955251 |
Target: 5'- -cGUUCcgGAAGaaacgCCUCGGgggucGCGCGUCCGu -3' miRNA: 3'- cuCGAG--UUUCa----GGAGCU-----UGCGCAGGC- -5' |
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29458 | 5' | -53.1 | NC_006151.1 | + | 15307 | 0.69 | 0.883312 |
Target: 5'- cGAGCUCAacgagcgcGAcGUCUaCGAcccGCGCGUCCu -3' miRNA: 3'- -CUCGAGU--------UU-CAGGaGCU---UGCGCAGGc -5' |
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29458 | 5' | -53.1 | NC_006151.1 | + | 17295 | 0.68 | 0.92722 |
Target: 5'- gGGGCUCcccGGG-CUUCGAGC-CGUCCGc -3' miRNA: 3'- -CUCGAGu--UUCaGGAGCUUGcGCAGGC- -5' |
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29458 | 5' | -53.1 | NC_006151.1 | + | 33895 | 0.66 | 0.966046 |
Target: 5'- cGGGggCGGGGgCCUCGcgccucCGCGUCCGg -3' miRNA: 3'- -CUCgaGUUUCaGGAGCuu----GCGCAGGC- -5' |
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29458 | 5' | -53.1 | NC_006151.1 | + | 43276 | 0.67 | 0.951188 |
Target: 5'- -cGCUCugcuuuggggggGGGGUCCUCGAACcuCGUCgGg -3' miRNA: 3'- cuCGAG------------UUUCAGGAGCUUGc-GCAGgC- -5' |
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29458 | 5' | -53.1 | NC_006151.1 | + | 50110 | 0.66 | 0.962676 |
Target: 5'- cAGCUCc-GGUCCgCGGuGCGCGcCCGa -3' miRNA: 3'- cUCGAGuuUCAGGaGCU-UGCGCaGGC- -5' |
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29458 | 5' | -53.1 | NC_006151.1 | + | 53286 | 0.71 | 0.79242 |
Target: 5'- -uGCUCGAAGcgcgaCUCGAGCGaGUCCGu -3' miRNA: 3'- cuCGAGUUUCag---GAGCUUGCgCAGGC- -5' |
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29458 | 5' | -53.1 | NC_006151.1 | + | 56954 | 0.68 | 0.908631 |
Target: 5'- -cGCUCAgcG-CCUCGAGCGCGcgguuguacaugCCGa -3' miRNA: 3'- cuCGAGUuuCaGGAGCUUGCGCa-----------GGC- -5' |
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29458 | 5' | -53.1 | NC_006151.1 | + | 59763 | 0.66 | 0.972133 |
Target: 5'- cAGCUC---GUCCUCGGGCaCGUCgGc -3' miRNA: 3'- cUCGAGuuuCAGGAGCUUGcGCAGgC- -5' |
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29458 | 5' | -53.1 | NC_006151.1 | + | 59948 | 0.71 | 0.79242 |
Target: 5'- cGGCUCGcAGcCCUCGAGCGCcacCCGc -3' miRNA: 3'- cUCGAGUuUCaGGAGCUUGCGca-GGC- -5' |
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29458 | 5' | -53.1 | NC_006151.1 | + | 63216 | 1.09 | 0.00569 |
Target: 5'- cGAGCUCAAAGUCCUCGAACGCGUCCGc -3' miRNA: 3'- -CUCGAGUUUCAGGAGCUUGCGCAGGC- -5' |
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29458 | 5' | -53.1 | NC_006151.1 | + | 63354 | 0.72 | 0.773609 |
Target: 5'- -cGCcCGcAGGUCCUCGAACGCcUCCu -3' miRNA: 3'- cuCGaGU-UUCAGGAGCUUGCGcAGGc -5' |
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29458 | 5' | -53.1 | NC_006151.1 | + | 65957 | 0.71 | 0.819486 |
Target: 5'- cGAGCgcggccgcgucgUCGAgccGGUCCUcgccggccgCGAGCGCGUCCu -3' miRNA: 3'- -CUCG------------AGUU---UCAGGA---------GCUUGCGCAGGc -5' |
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29458 | 5' | -53.1 | NC_006151.1 | + | 68844 | 0.72 | 0.754272 |
Target: 5'- -uGCUCGAGGcgCCgCGcGACGCGUCCa -3' miRNA: 3'- cuCGAGUUUCa-GGaGC-UUGCGCAGGc -5' |
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29458 | 5' | -53.1 | NC_006151.1 | + | 71208 | 0.68 | 0.921684 |
Target: 5'- gGAGCUCGu-GUCCgugaccgUGGGCGCGcgcgCCGa -3' miRNA: 3'- -CUCGAGUuuCAGGa------GCUUGCGCa---GGC- -5' |
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29458 | 5' | -53.1 | NC_006151.1 | + | 74921 | 0.72 | 0.754272 |
Target: 5'- uGAGCUCGAAG-CCgc--GCGCGUCCc -3' miRNA: 3'- -CUCGAGUUUCaGGagcuUGCGCAGGc -5' |
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29458 | 5' | -53.1 | NC_006151.1 | + | 79999 | 0.66 | 0.969197 |
Target: 5'- gGGGCgggUAAAaaaUUCUUGAACGCGUUCGg -3' miRNA: 3'- -CUCGa--GUUUc--AGGAGCUUGCGCAGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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