miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29459 3' -60.5 NC_006151.1 + 65826 0.66 0.725371
Target:  5'- -aUGGgcggCCGCGCCaGCGcgGCCCGgCu -3'
miRNA:   3'- ggACCa---GGCGCGGaCGUagCGGGUgG- -5'
29459 3' -60.5 NC_006151.1 + 68218 0.66 0.725371
Target:  5'- --cGGcCCuGCGCCagGCGcagCGCCCGCg -3'
miRNA:   3'- ggaCCaGG-CGCGGa-CGUa--GCGGGUGg -5'
29459 3' -60.5 NC_006151.1 + 131552 0.66 0.725371
Target:  5'- gCCUcGGgcgCCGCacggGCCccGCGUCGCUCAUg -3'
miRNA:   3'- -GGA-CCa--GGCG----CGGa-CGUAGCGGGUGg -5'
29459 3' -60.5 NC_006151.1 + 10485 0.66 0.715799
Target:  5'- --aGGagagCCGC-CCgGCGcgCGCCCGCCg -3'
miRNA:   3'- ggaCCa---GGCGcGGaCGUa-GCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 126401 0.66 0.715799
Target:  5'- gCUGGccagCCGCGUCgggGCGauggccaCGCgCCGCCg -3'
miRNA:   3'- gGACCa---GGCGCGGa--CGUa------GCG-GGUGG- -5'
29459 3' -60.5 NC_006151.1 + 31190 0.66 0.715799
Target:  5'- --cGGUCCGcCGCaCaGUGUgGCCCGCg -3'
miRNA:   3'- ggaCCAGGC-GCG-GaCGUAgCGGGUGg -5'
29459 3' -60.5 NC_006151.1 + 50123 0.66 0.715799
Target:  5'- --cGGUgCGCGCCcGa--CGCCCACg -3'
miRNA:   3'- ggaCCAgGCGCGGaCguaGCGGGUGg -5'
29459 3' -60.5 NC_006151.1 + 52917 0.66 0.715799
Target:  5'- gCCgGGagCGUGaagaccacaaaCUGCgcGUCGCCCGCCa -3'
miRNA:   3'- -GGaCCagGCGCg----------GACG--UAGCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 57864 0.66 0.715799
Target:  5'- gCUGGUCgCGCGCCccgccgGCAgacgUCGCagCGCa -3'
miRNA:   3'- gGACCAG-GCGCGGa-----CGU----AGCGg-GUGg -5'
29459 3' -60.5 NC_006151.1 + 30927 0.66 0.715799
Target:  5'- --cGGcCCGCGC--GgAUCGCCCGCg -3'
miRNA:   3'- ggaCCaGGCGCGgaCgUAGCGGGUGg -5'
29459 3' -60.5 NC_006151.1 + 134071 0.66 0.715799
Target:  5'- uCCUGGUgUGUGCgaGCGa-GCCCgugACCg -3'
miRNA:   3'- -GGACCAgGCGCGgaCGUagCGGG---UGG- -5'
29459 3' -60.5 NC_006151.1 + 142086 0.66 0.710023
Target:  5'- aUCUGGUacgcCCGCaggaCCUGCGcgggcugggugaaGCCCACCg -3'
miRNA:   3'- -GGACCA----GGCGc---GGACGUag-----------CGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 4115 0.66 0.706161
Target:  5'- --aGaGUCCGCgGCCUGCcgcCGCUCgGCCg -3'
miRNA:   3'- ggaC-CAGGCG-CGGACGua-GCGGG-UGG- -5'
29459 3' -60.5 NC_006151.1 + 38238 0.66 0.706161
Target:  5'- gCCUGGaCCuaCGCCgcgGCccucuUCGCCCcgGCCa -3'
miRNA:   3'- -GGACCaGGc-GCGGa--CGu----AGCGGG--UGG- -5'
29459 3' -60.5 NC_006151.1 + 85632 0.66 0.706161
Target:  5'- gCCgcg-CgGCGCCaGCGgggacgCGCCCGCCu -3'
miRNA:   3'- -GGaccaGgCGCGGaCGUa-----GCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 128022 0.66 0.706161
Target:  5'- --cGGcgaCgGCGUCUGCGaCGCCCGCg -3'
miRNA:   3'- ggaCCa--GgCGCGGACGUaGCGGGUGg -5'
29459 3' -60.5 NC_006151.1 + 131215 0.66 0.706161
Target:  5'- uCCUcuUCCGCGUCccacGCGUCGCCgucggcCGCCa -3'
miRNA:   3'- -GGAccAGGCGCGGa---CGUAGCGG------GUGG- -5'
29459 3' -60.5 NC_006151.1 + 23379 0.66 0.704226
Target:  5'- cCCUcgucGGUcgaggggaagcacCCGCGCCaGCgcuggugGUCGCCgGCCg -3'
miRNA:   3'- -GGA----CCA-------------GGCGCGGaCG-------UAGCGGgUGG- -5'
29459 3' -60.5 NC_006151.1 + 48589 0.66 0.696464
Target:  5'- gCCcGGggUGCGCCUcGUcgUGCCUGCCg -3'
miRNA:   3'- -GGaCCagGCGCGGA-CGuaGCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 55394 0.66 0.696464
Target:  5'- --aGGUgCgGCGCCUGCGcgagcagGCCCugCg -3'
miRNA:   3'- ggaCCA-GgCGCGGACGUag-----CGGGugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.