miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29459 5' -54.8 NC_006151.1 + 85073 0.67 0.907706
Target:  5'- aGGCCuGcgg-GCGCCuguACGUGGGCAa -3'
miRNA:   3'- gUCGGcCaagaUGCGGu--UGCACCUGU- -5'
29459 5' -54.8 NC_006151.1 + 37391 0.67 0.901389
Target:  5'- aCGGCCGcGUccgCUACGgCGGCGccggGGACu -3'
miRNA:   3'- -GUCGGC-CAa--GAUGCgGUUGCa---CCUGu -5'
29459 5' -54.8 NC_006151.1 + 56970 0.67 0.894834
Target:  5'- -cGCgCGGUUgUACauGCCGACGaGGGCGg -3'
miRNA:   3'- guCG-GCCAAgAUG--CGGUUGCaCCUGU- -5'
29459 5' -54.8 NC_006151.1 + 50361 0.67 0.894834
Target:  5'- -cGCCGcgUCUcCGCCGGCGgGGGCGa -3'
miRNA:   3'- guCGGCcaAGAuGCGGUUGCaCCUGU- -5'
29459 5' -54.8 NC_006151.1 + 55174 0.67 0.894834
Target:  5'- gAGaCCGGggC-GCGCauccuggaCAGCGUGGACAc -3'
miRNA:   3'- gUC-GGCCaaGaUGCG--------GUUGCACCUGU- -5'
29459 5' -54.8 NC_006151.1 + 78109 0.67 0.894834
Target:  5'- uGGCCGGggCggACGCCAuccuGCGgcGGGCc -3'
miRNA:   3'- gUCGGCCaaGa-UGCGGU----UGCa-CCUGu -5'
29459 5' -54.8 NC_006151.1 + 4325 0.67 0.894834
Target:  5'- gCGGCCGGg-CUGCGCggcggcgaaggCGGCGcGGACGc -3'
miRNA:   3'- -GUCGGCCaaGAUGCG-----------GUUGCaCCUGU- -5'
29459 5' -54.8 NC_006151.1 + 2822 0.67 0.888044
Target:  5'- gCGGCCGGgUCcAgGCgGACGcGGACGu -3'
miRNA:   3'- -GUCGGCCaAGaUgCGgUUGCaCCUGU- -5'
29459 5' -54.8 NC_006151.1 + 58400 0.67 0.881022
Target:  5'- gCAGCCGGccaugGCGCgCAGC-UGGGCGu -3'
miRNA:   3'- -GUCGGCCaaga-UGCG-GUUGcACCUGU- -5'
29459 5' -54.8 NC_006151.1 + 97471 0.67 0.881022
Target:  5'- gCAGgCGGcUCacCGCC-ACGUGGACGc -3'
miRNA:   3'- -GUCgGCCaAGauGCGGuUGCACCUGU- -5'
29459 5' -54.8 NC_006151.1 + 96599 0.67 0.881022
Target:  5'- -cGCCGGgcgCgggcGCGCCGACGUcgugcccgaGGGCGc -3'
miRNA:   3'- guCGGCCaa-Ga---UGCGGUUGCA---------CCUGU- -5'
29459 5' -54.8 NC_006151.1 + 85628 0.68 0.858616
Target:  5'- -cGCCGccgCgcgGCGCCAGCGgGGACGc -3'
miRNA:   3'- guCGGCcaaGa--UGCGGUUGCaCCUGU- -5'
29459 5' -54.8 NC_006151.1 + 123332 0.68 0.858616
Target:  5'- aGGCCacGGUgCaGCGCCAcccCGUGGACGc -3'
miRNA:   3'- gUCGG--CCAaGaUGCGGUu--GCACCUGU- -5'
29459 5' -54.8 NC_006151.1 + 21494 0.68 0.858616
Target:  5'- gCGGCCGGggg-GCGCgGGCGUcaccgGGGCGg -3'
miRNA:   3'- -GUCGGCCaagaUGCGgUUGCA-----CCUGU- -5'
29459 5' -54.8 NC_006151.1 + 81758 0.68 0.85072
Target:  5'- gAGCUGGUcCgcggGCGCCAcCG-GGACGc -3'
miRNA:   3'- gUCGGCCAaGa---UGCGGUuGCaCCUGU- -5'
29459 5' -54.8 NC_006151.1 + 113133 0.68 0.848311
Target:  5'- -cGCCGGgcccggCUACGCCGACcucgccaugcugcuGcUGGGCAa -3'
miRNA:   3'- guCGGCCaa----GAUGCGGUUG--------------C-ACCUGU- -5'
29459 5' -54.8 NC_006151.1 + 4218 0.68 0.84262
Target:  5'- gCGGCCGGg---GCGCgGGCGggcgcGGGCAg -3'
miRNA:   3'- -GUCGGCCaagaUGCGgUUGCa----CCUGU- -5'
29459 5' -54.8 NC_006151.1 + 73692 0.68 0.834324
Target:  5'- uCGGCgCGGcUCUGCGCC-GCGUgcuGGGCc -3'
miRNA:   3'- -GUCG-GCCaAGAUGCGGuUGCA---CCUGu -5'
29459 5' -54.8 NC_006151.1 + 20129 0.68 0.834324
Target:  5'- gGGCUGGggggCggGCGCCGcgggggcggcGCGUGGACc -3'
miRNA:   3'- gUCGGCCaa--Ga-UGCGGU----------UGCACCUGu -5'
29459 5' -54.8 NC_006151.1 + 70734 0.69 0.808337
Target:  5'- uGGCCGGcacgCUgcACGUguACGUGGACc -3'
miRNA:   3'- gUCGGCCaa--GA--UGCGguUGCACCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.