miRNA display CGI


Results 1 - 20 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29468 3' -54.8 NC_006151.1 + 58870 0.66 0.938175
Target:  5'- -cCGgcGCGCCGgGuccGUCCA-GGCCg -3'
miRNA:   3'- caGUauCGCGGCgUuu-CAGGUgCCGG- -5'
29468 3' -54.8 NC_006151.1 + 10007 0.66 0.938175
Target:  5'- cUCGagAGCgGCgGCGgcGgucgCCGCGGCCa -3'
miRNA:   3'- cAGUa-UCG-CGgCGUuuCa---GGUGCCGG- -5'
29468 3' -54.8 NC_006151.1 + 39772 0.66 0.938175
Target:  5'- ----gGGCGCCGCcuucGGgcaCCgcGCGGCCa -3'
miRNA:   3'- caguaUCGCGGCGuu--UCa--GG--UGCCGG- -5'
29468 3' -54.8 NC_006151.1 + 73407 0.66 0.938175
Target:  5'- -gCGUAcGCgGCCGUGAAGcCCACGcCCa -3'
miRNA:   3'- caGUAU-CG-CGGCGUUUCaGGUGCcGG- -5'
29468 3' -54.8 NC_006151.1 + 1674 0.66 0.938175
Target:  5'- aUCcuc-CGCCGCcGAGcccuccgCCGCGGCCg -3'
miRNA:   3'- cAGuaucGCGGCGuUUCa------GGUGCCGG- -5'
29468 3' -54.8 NC_006151.1 + 17406 0.66 0.938175
Target:  5'- -gCGUGGCGCgcggcaGCAGGG-CCAgCGaGCCg -3'
miRNA:   3'- caGUAUCGCGg-----CGUUUCaGGU-GC-CGG- -5'
29468 3' -54.8 NC_006151.1 + 35139 0.66 0.938175
Target:  5'- cUCAUuggcGCGCCGCGg---CCAagaUGGCCg -3'
miRNA:   3'- cAGUAu---CGCGGCGUuucaGGU---GCCGG- -5'
29468 3' -54.8 NC_006151.1 + 58583 0.66 0.938175
Target:  5'- ----cGGCGUCGCGgccgugaccAGGUUCGUGGCCg -3'
miRNA:   3'- caguaUCGCGGCGU---------UUCAGGUGCCGG- -5'
29468 3' -54.8 NC_006151.1 + 62433 0.66 0.938175
Target:  5'- cGUCGU-GCGCCu---GGUCCGC-GCCu -3'
miRNA:   3'- -CAGUAuCGCGGcguuUCAGGUGcCGG- -5'
29468 3' -54.8 NC_006151.1 + 57230 0.66 0.938175
Target:  5'- cGUCGcaggcGGCGCgCGCGGccucggcGUCCgcGCGGCCc -3'
miRNA:   3'- -CAGUa----UCGCG-GCGUUu------CAGG--UGCCGG- -5'
29468 3' -54.8 NC_006151.1 + 18739 0.66 0.938175
Target:  5'- cGUCGUcGcCGCCGCcGGGgccCCACGGg- -3'
miRNA:   3'- -CAGUAuC-GCGGCGuUUCa--GGUGCCgg -5'
29468 3' -54.8 NC_006151.1 + 135032 0.66 0.938175
Target:  5'- ----cGGgGCCGCGucGUCCucgggGCGGUCc -3'
miRNA:   3'- caguaUCgCGGCGUuuCAGG-----UGCCGG- -5'
29468 3' -54.8 NC_006151.1 + 105588 0.66 0.938175
Target:  5'- uUCGacGCGCgCGCGGAGcggcugCCGCGGUg -3'
miRNA:   3'- cAGUauCGCG-GCGUUUCa-----GGUGCCGg -5'
29468 3' -54.8 NC_006151.1 + 98117 0.66 0.938175
Target:  5'- ----aGGCGCgCGCGcgccGAGcCCACGGUUa -3'
miRNA:   3'- caguaUCGCG-GCGU----UUCaGGUGCCGG- -5'
29468 3' -54.8 NC_006151.1 + 65922 0.66 0.938175
Target:  5'- cUCGUcgGGCGCCccgccgccgGCccAGUCCucgucgagcGCGGCCg -3'
miRNA:   3'- cAGUA--UCGCGG---------CGuuUCAGG---------UGCCGG- -5'
29468 3' -54.8 NC_006151.1 + 87433 0.66 0.937688
Target:  5'- --gGUGGCcgugcccGCCGCcg---CCGCGGCCg -3'
miRNA:   3'- cagUAUCG-------CGGCGuuucaGGUGCCGG- -5'
29468 3' -54.8 NC_006151.1 + 6523 0.66 0.935215
Target:  5'- --gAUAGcCGCCGgagagccggagucuuCAGAGUCCGC-GCCg -3'
miRNA:   3'- cagUAUC-GCGGC---------------GUUUCAGGUGcCGG- -5'
29468 3' -54.8 NC_006151.1 + 139615 0.66 0.933193
Target:  5'- cGUCcgGGCGCgGCuGGGggCCAucCGGCg -3'
miRNA:   3'- -CAGuaUCGCGgCGuUUCa-GGU--GCCGg -5'
29468 3' -54.8 NC_006151.1 + 133108 0.66 0.933193
Target:  5'- gGUCG-AGCGCCGCGuccgucgucgggGGGUUCAUGuCCc -3'
miRNA:   3'- -CAGUaUCGCGGCGU------------UUCAGGUGCcGG- -5'
29468 3' -54.8 NC_006151.1 + 95314 0.66 0.933193
Target:  5'- -gCGcAGCGCgGCAAAGUCgAaGGCg -3'
miRNA:   3'- caGUaUCGCGgCGUUUCAGgUgCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.