miRNA display CGI


Results 1 - 20 of 294 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29468 3' -54.8 NC_006151.1 + 1674 0.66 0.938175
Target:  5'- aUCcuc-CGCCGCcGAGcccuccgCCGCGGCCg -3'
miRNA:   3'- cAGuaucGCGGCGuUUCa------GGUGCCGG- -5'
29468 3' -54.8 NC_006151.1 + 1817 0.67 0.884542
Target:  5'- ----aGGCGCCGgGGAGgcaagcgCCGCcgGGCCg -3'
miRNA:   3'- caguaUCGCGGCgUUUCa------GGUG--CCGG- -5'
29468 3' -54.8 NC_006151.1 + 2853 0.67 0.884542
Target:  5'- cGUgGUAGUcccccacgGCCGgGccGUCCGCgGGCCa -3'
miRNA:   3'- -CAgUAUCG--------CGGCgUuuCAGGUG-CCGG- -5'
29468 3' -54.8 NC_006151.1 + 2955 0.68 0.869262
Target:  5'- -cCAcGGCGCCGgcgaagcCGAGGUCC-CGcGCCg -3'
miRNA:   3'- caGUaUCGCGGC-------GUUUCAGGuGC-CGG- -5'
29468 3' -54.8 NC_006151.1 + 3023 0.67 0.891463
Target:  5'- uGUCGgGGCGCC-CGGuccAGUUCcCGGCCc -3'
miRNA:   3'- -CAGUaUCGCGGcGUU---UCAGGuGCCGG- -5'
29468 3' -54.8 NC_006151.1 + 3099 0.69 0.803637
Target:  5'- ----cAGCGCCG-AGAGgccgCCGCGGCg -3'
miRNA:   3'- caguaUCGCGGCgUUUCa---GGUGCCGg -5'
29468 3' -54.8 NC_006151.1 + 3399 0.68 0.870012
Target:  5'- cUCGgAGgGCCGCGgcguguGGGUCuCGcCGGCCg -3'
miRNA:   3'- cAGUaUCgCGGCGU------UUCAG-GU-GCCGG- -5'
29468 3' -54.8 NC_006151.1 + 3712 0.7 0.775882
Target:  5'- uUCuu-GCGCCGCucgggcgcuGGGUCCG-GGCCg -3'
miRNA:   3'- cAGuauCGCGGCGu--------UUCAGGUgCCGG- -5'
29468 3' -54.8 NC_006151.1 + 4019 0.72 0.665891
Target:  5'- ----gAGgGCCGCGgcguAGGUCCagGCGGCCu -3'
miRNA:   3'- caguaUCgCGGCGU----UUCAGG--UGCCGG- -5'
29468 3' -54.8 NC_006151.1 + 4090 0.72 0.655536
Target:  5'- -cCAcGGUGCgggcgacgagggCGaCAGAGUCCGCGGCCu -3'
miRNA:   3'- caGUaUCGCG------------GC-GUUUCAGGUGCCGG- -5'
29468 3' -54.8 NC_006151.1 + 4393 0.66 0.927966
Target:  5'- ----cGGCGCgG--GGGUCCGCGGCg -3'
miRNA:   3'- caguaUCGCGgCguUUCAGGUGCCGg -5'
29468 3' -54.8 NC_006151.1 + 4481 0.69 0.803637
Target:  5'- aUCGUAGCgGCgGCucauGG-CCACGGCg -3'
miRNA:   3'- cAGUAUCG-CGgCGuu--UCaGGUGCCGg -5'
29468 3' -54.8 NC_006151.1 + 4795 0.69 0.821355
Target:  5'- -cCGcGGCGCgGUAGcgGG-CCGCGGCCu -3'
miRNA:   3'- caGUaUCGCGgCGUU--UCaGGUGCCGG- -5'
29468 3' -54.8 NC_006151.1 + 4858 0.7 0.727106
Target:  5'- aGUCcccGGCGCCGCcguAGcggaCGCGGCCg -3'
miRNA:   3'- -CAGua-UCGCGGCGuu-UCag--GUGCCGG- -5'
29468 3' -54.8 NC_006151.1 + 5035 0.67 0.9046
Target:  5'- ----cGGgGCCGgGGAGgCCGCGGCg -3'
miRNA:   3'- caguaUCgCGGCgUUUCaGGUGCCGg -5'
29468 3' -54.8 NC_006151.1 + 5075 0.74 0.552285
Target:  5'- -gCcgAGgGCCGCGGGG-CCGCGGCg -3'
miRNA:   3'- caGuaUCgCGGCGUUUCaGGUGCCGg -5'
29468 3' -54.8 NC_006151.1 + 5098 0.67 0.9046
Target:  5'- ----gGGCGCCgGCGGAGacggUgGCGGCCc -3'
miRNA:   3'- caguaUCGCGG-CGUUUCa---GgUGCCGG- -5'
29468 3' -54.8 NC_006151.1 + 5234 0.69 0.821355
Target:  5'- -gCcgAGCGCCGCGcGG-CgGCGGCg -3'
miRNA:   3'- caGuaUCGCGGCGUuUCaGgUGCCGg -5'
29468 3' -54.8 NC_006151.1 + 5301 0.67 0.903966
Target:  5'- aGUCGcugccgcugcugcUGGaGCUGCuGAAG-CCGCGGCCg -3'
miRNA:   3'- -CAGU-------------AUCgCGGCG-UUUCaGGUGCCGG- -5'
29468 3' -54.8 NC_006151.1 + 5729 0.73 0.593301
Target:  5'- --gGUGGCGCCG--GGGUCCGaGGCCg -3'
miRNA:   3'- cagUAUCGCGGCguUUCAGGUgCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.