miRNA display CGI


Results 1 - 20 of 611 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29468 5' -63.4 NC_006151.1 + 130946 0.66 0.606999
Target:  5'- nCGGCgGgGggUCgCGCGGGCGCGGGg -3'
miRNA:   3'- cGCCGgUgCggAG-GCGCCCGUGCUCg -5'
29468 5' -63.4 NC_006151.1 + 13449 0.66 0.606999
Target:  5'- uUGGCCggucccggACGCCcgucCCGCGGGC-CGGaccGCc -3'
miRNA:   3'- cGCCGG--------UGCGGa---GGCGCCCGuGCU---CG- -5'
29468 5' -63.4 NC_006151.1 + 13730 0.66 0.606999
Target:  5'- uUGGCCggucccggACGCCcgucCCGCGGGC-CGGaccGCc -3'
miRNA:   3'- cGCCGG--------UGCGGa---GGCGCCCGuGCU---CG- -5'
29468 5' -63.4 NC_006151.1 + 39793 0.66 0.606999
Target:  5'- cGCGGCCAa-CCgCUGgGGGCuCG-GCg -3'
miRNA:   3'- -CGCCGGUgcGGaGGCgCCCGuGCuCG- -5'
29468 5' -63.4 NC_006151.1 + 3384 0.66 0.606999
Target:  5'- gGCGGCgAgggcCGCCUCgGaGGGcCGCG-GCg -3'
miRNA:   3'- -CGCCGgU----GCGGAGgCgCCC-GUGCuCG- -5'
29468 5' -63.4 NC_006151.1 + 39666 0.66 0.606999
Target:  5'- uGCcGCCgcGCGCCUaCCGCcaGCGCGuGCu -3'
miRNA:   3'- -CGcCGG--UGCGGA-GGCGccCGUGCuCG- -5'
29468 5' -63.4 NC_006151.1 + 105677 0.66 0.606999
Target:  5'- cGCGGCCuACGgCggCGCGgGGC-CGAcGCc -3'
miRNA:   3'- -CGCCGG-UGCgGagGCGC-CCGuGCU-CG- -5'
29468 5' -63.4 NC_006151.1 + 112015 0.66 0.606999
Target:  5'- gGCGGCgGCGauuUUCCcgGCGGgaGCugGGGCc -3'
miRNA:   3'- -CGCCGgUGCg--GAGG--CGCC--CGugCUCG- -5'
29468 5' -63.4 NC_006151.1 + 129168 0.66 0.606999
Target:  5'- uCGGCCACGUCg-CGCaGGGCcgccACG-GCc -3'
miRNA:   3'- cGCCGGUGCGGagGCG-CCCG----UGCuCG- -5'
29468 5' -63.4 NC_006151.1 + 135110 0.66 0.606999
Target:  5'- gGCGGCgguaGCGCgCgggGCGGGCugG-GCg -3'
miRNA:   3'- -CGCCGg---UGCG-GaggCGCCCGugCuCG- -5'
29468 5' -63.4 NC_006151.1 + 85694 0.66 0.606999
Target:  5'- uGCuGGcCCACuacgucgucgugGCCUaCCGCGcGG-ACGAGCg -3'
miRNA:   3'- -CG-CC-GGUG------------CGGA-GGCGC-CCgUGCUCG- -5'
29468 5' -63.4 NC_006151.1 + 141570 0.66 0.60603
Target:  5'- cGCGauccuccGCCGCuCCUCCcccCGGGCGaGAGCc -3'
miRNA:   3'- -CGC-------CGGUGcGGAGGc--GCCCGUgCUCG- -5'
29468 5' -63.4 NC_006151.1 + 63796 0.66 0.60603
Target:  5'- uCGGCCgucgccaGCGCCUCgC-CGGGCcccgGGGCg -3'
miRNA:   3'- cGCCGG-------UGCGGAG-GcGCCCGug--CUCG- -5'
29468 5' -63.4 NC_006151.1 + 128123 0.66 0.60603
Target:  5'- cGCGcGCgAaGCgCUCCGUGGGCccgccguACGAGg -3'
miRNA:   3'- -CGC-CGgUgCG-GAGGCGCCCG-------UGCUCg -5'
29468 5' -63.4 NC_006151.1 + 121036 0.66 0.601189
Target:  5'- cGCGGCacuuugugCugGCCUgcCCGCgcguGGGCuucacgugcucgcagACGGGCg -3'
miRNA:   3'- -CGCCG--------GugCGGA--GGCG----CCCG---------------UGCUCG- -5'
29468 5' -63.4 NC_006151.1 + 73978 0.66 0.601189
Target:  5'- cGUGGCCAUGC--CCGCGuccGGCGCcaccgaggccaggagGGGCg -3'
miRNA:   3'- -CGCCGGUGCGgaGGCGC---CCGUG---------------CUCG- -5'
29468 5' -63.4 NC_006151.1 + 106310 0.66 0.597319
Target:  5'- aUGGCCaagACGCUggaCGCGGuGCugGAccGCg -3'
miRNA:   3'- cGCCGG---UGCGGag-GCGCC-CGugCU--CG- -5'
29468 5' -63.4 NC_006151.1 + 73412 0.66 0.597319
Target:  5'- cGCGGCCgugaagcccACGCCcaggUCCaCGuuGGCGCGGGg -3'
miRNA:   3'- -CGCCGG---------UGCGG----AGGcGC--CCGUGCUCg -5'
29468 5' -63.4 NC_006151.1 + 11332 0.66 0.597319
Target:  5'- cGCGGgcgauaCCGCGCgggccgcCCGCGGGCGCuaccGCg -3'
miRNA:   3'- -CGCC------GGUGCGga-----GGCGCCCGUGcu--CG- -5'
29468 5' -63.4 NC_006151.1 + 119315 0.66 0.597319
Target:  5'- aCGGCCuCGCagcCCGCGacGGCccCGGGCa -3'
miRNA:   3'- cGCCGGuGCGga-GGCGC--CCGu-GCUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.