miRNA display CGI


Results 1 - 20 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29468 5' -63.4 NC_006151.1 + 58972 1.13 0.000348
Target:  5'- cGCGGCCACGCCUCCGCGGGCACGAGCg -3'
miRNA:   3'- -CGCCGGUGCGGAGGCGCCCGUGCUCG- -5'
29468 5' -63.4 NC_006151.1 + 53972 0.95 0.006508
Target:  5'- gGCGGCgGCGCCUCCGCGGGCgucgcgGCGAGCu -3'
miRNA:   3'- -CGCCGgUGCGGAGGCGCCCG------UGCUCG- -5'
29468 5' -63.4 NC_006151.1 + 68036 0.88 0.020645
Target:  5'- gGCGGCC-CGCCggcgCgGCGGGCACGGGCu -3'
miRNA:   3'- -CGCCGGuGCGGa---GgCGCCCGUGCUCG- -5'
29468 5' -63.4 NC_006151.1 + 69122 0.88 0.022918
Target:  5'- --cGCCGCGCCUCCGCGGGCA-GGGCg -3'
miRNA:   3'- cgcCGGUGCGGAGGCGCCCGUgCUCG- -5'
29468 5' -63.4 NC_006151.1 + 64466 0.85 0.038648
Target:  5'- gGCGGCgCGCGCCgccgcggcggggacgCcCGCGGGCGCGGGCg -3'
miRNA:   3'- -CGCCG-GUGCGGa--------------G-GCGCCCGUGCUCG- -5'
29468 5' -63.4 NC_006151.1 + 111315 0.84 0.041658
Target:  5'- gGCGGCCGCGUg-CC-CGGGCACGGGCg -3'
miRNA:   3'- -CGCCGGUGCGgaGGcGCCCGUGCUCG- -5'
29468 5' -63.4 NC_006151.1 + 119059 0.84 0.041658
Target:  5'- cGCGGCC--GCCUCCGCGGGCGCGcccgucucgcaGGCc -3'
miRNA:   3'- -CGCCGGugCGGAGGCGCCCGUGC-----------UCG- -5'
29468 5' -63.4 NC_006151.1 + 67988 0.83 0.047395
Target:  5'- gGCGGCC-CGCCggcgCCGCGGcCACGGGCu -3'
miRNA:   3'- -CGCCGGuGCGGa---GGCGCCcGUGCUCG- -5'
29468 5' -63.4 NC_006151.1 + 61983 0.83 0.052532
Target:  5'- gGCGuGCCACGCCUgCaaGGGCACGGGUg -3'
miRNA:   3'- -CGC-CGGUGCGGAgGcgCCCGUGCUCG- -5'
29468 5' -63.4 NC_006151.1 + 81539 0.82 0.056302
Target:  5'- cGCGGCgGCGCgCUCCGCGGuGCACauggccguggugcgGAGCa -3'
miRNA:   3'- -CGCCGgUGCG-GAGGCGCC-CGUG--------------CUCG- -5'
29468 5' -63.4 NC_006151.1 + 66530 0.81 0.064479
Target:  5'- cGCGcGCCGCGCuCUUCGgGGGCGCGcGCg -3'
miRNA:   3'- -CGC-CGGUGCG-GAGGCgCCCGUGCuCG- -5'
29468 5' -63.4 NC_006151.1 + 88215 0.81 0.067854
Target:  5'- gGCGaGgCGCGCCUCCGgGGGCACGcagaGGCc -3'
miRNA:   3'- -CGC-CgGUGCGGAGGCgCCCGUGC----UCG- -5'
29468 5' -63.4 NC_006151.1 + 50351 0.8 0.074929
Target:  5'- cGCGGCCucccgccGCGUCUCCGCcGGCGgGGGCg -3'
miRNA:   3'- -CGCCGG-------UGCGGAGGCGcCCGUgCUCG- -5'
29468 5' -63.4 NC_006151.1 + 92732 0.8 0.07512
Target:  5'- gGUGGCCAUGCUcacgCCgGCGcGGCACGGGCa -3'
miRNA:   3'- -CGCCGGUGCGGa---GG-CGC-CCGUGCUCG- -5'
29468 5' -63.4 NC_006151.1 + 90740 0.8 0.07705
Target:  5'- gGCGGCgGCGCCcUCGgGGGCGgCGGGCa -3'
miRNA:   3'- -CGCCGgUGCGGaGGCgCCCGU-GCUCG- -5'
29468 5' -63.4 NC_006151.1 + 89930 0.8 0.081053
Target:  5'- uGUaGCCGCGCCccaggUCCGCGGGCGCG-GCc -3'
miRNA:   3'- -CGcCGGUGCGG-----AGGCGCCCGUGCuCG- -5'
29468 5' -63.4 NC_006151.1 + 136980 0.8 0.081053
Target:  5'- gGCcGCCGCGCCgggCgGCGGGCGCGcGCg -3'
miRNA:   3'- -CGcCGGUGCGGa--GgCGCCCGUGCuCG- -5'
29468 5' -63.4 NC_006151.1 + 97249 0.8 0.083129
Target:  5'- cGCGGCCGCGCaugUCGgGGGCccacACGGGCa -3'
miRNA:   3'- -CGCCGGUGCGga-GGCgCCCG----UGCUCG- -5'
29468 5' -63.4 NC_006151.1 + 57522 0.8 0.083129
Target:  5'- gGCGGCgGcCGCCUCCgGCGcGGCcGCGGGCa -3'
miRNA:   3'- -CGCCGgU-GCGGAGG-CGC-CCG-UGCUCG- -5'
29468 5' -63.4 NC_006151.1 + 58326 0.79 0.087433
Target:  5'- gGCGGCgCGCcgGCCUCCGCGuaGGCGCGcGCg -3'
miRNA:   3'- -CGCCG-GUG--CGGAGGCGC--CCGUGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.