miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29469 3' -55.9 NC_006151.1 + 90950 0.66 0.915548
Target:  5'- -gCGAAGGGcuccGUCGCgccgaccgCGUCgaCGCCCUg -3'
miRNA:   3'- caGUUUCCC----CAGCGa-------GUAGa-GCGGGG- -5'
29469 3' -55.9 NC_006151.1 + 103872 0.66 0.903428
Target:  5'- ---cGAGGGGaCGCUgGUCgaggCGCgCCa -3'
miRNA:   3'- caguUUCCCCaGCGAgUAGa---GCGgGG- -5'
29469 3' -55.9 NC_006151.1 + 10108 0.66 0.903428
Target:  5'- -gCGGAGGaGGaagCGCUCg---CGCCCCu -3'
miRNA:   3'- caGUUUCC-CCa--GCGAGuagaGCGGGG- -5'
29469 3' -55.9 NC_006151.1 + 127546 0.66 0.890368
Target:  5'- -cCAGGGGGcGUCG-UCGUCguggcCGCCgCCg -3'
miRNA:   3'- caGUUUCCC-CAGCgAGUAGa----GCGG-GG- -5'
29469 3' -55.9 NC_006151.1 + 63753 0.66 0.883494
Target:  5'- cGUCGGcGGGGcGUC-CUCGg--CGCCCCc -3'
miRNA:   3'- -CAGUU-UCCC-CAGcGAGUagaGCGGGG- -5'
29469 3' -55.9 NC_006151.1 + 52345 0.67 0.876396
Target:  5'- -gCAAAGaGGUCGUcgUCGUCguccgccggcgCGCCCCc -3'
miRNA:   3'- caGUUUCcCCAGCG--AGUAGa----------GCGGGG- -5'
29469 3' -55.9 NC_006151.1 + 63786 0.67 0.876396
Target:  5'- -cCAGGcGGGGUCgGC-CGUCgccagCGCCUCg -3'
miRNA:   3'- caGUUU-CCCCAG-CGaGUAGa----GCGGGG- -5'
29469 3' -55.9 NC_006151.1 + 86303 0.67 0.876396
Target:  5'- cGUCAAcugcccgcagcuGGGGGcCGUg---CUCGCCCg -3'
miRNA:   3'- -CAGUU------------UCCCCaGCGaguaGAGCGGGg -5'
29469 3' -55.9 NC_006151.1 + 26596 0.67 0.872031
Target:  5'- cUCGGGGGGcucaaacacgucgucGUCGCcCAcgCUgGCCCCg -3'
miRNA:   3'- cAGUUUCCC---------------CAGCGaGUa-GAgCGGGG- -5'
29469 3' -55.9 NC_006151.1 + 79201 0.67 0.869079
Target:  5'- gGUCAugaGAGGGGauuccCGgUCG-CUCGgCCCCa -3'
miRNA:   3'- -CAGU---UUCCCCa----GCgAGUaGAGC-GGGG- -5'
29469 3' -55.9 NC_006151.1 + 87882 0.67 0.861547
Target:  5'- cGUgGGGGGGGaacgCGCggggCGUCacgGCCCCg -3'
miRNA:   3'- -CAgUUUCCCCa---GCGa---GUAGag-CGGGG- -5'
29469 3' -55.9 NC_006151.1 + 111116 0.67 0.853808
Target:  5'- cUCGgcGGGGagCGCgCGUCUgugcgCGCCCCc -3'
miRNA:   3'- cAGUuuCCCCa-GCGaGUAGA-----GCGGGG- -5'
29469 3' -55.9 NC_006151.1 + 56043 0.67 0.853808
Target:  5'- cGUCGAGGGcGGcgCGCUgAcgCUgCGCCUCg -3'
miRNA:   3'- -CAGUUUCC-CCa-GCGAgUa-GA-GCGGGG- -5'
29469 3' -55.9 NC_006151.1 + 104346 0.68 0.829406
Target:  5'- cGUCAuc-GGGUCGCUCuUCggCGCCg- -3'
miRNA:   3'- -CAGUuucCCCAGCGAGuAGa-GCGGgg -5'
29469 3' -55.9 NC_006151.1 + 31013 0.68 0.820902
Target:  5'- --gAAGGGGGUCGCcgccgCGgccCUCGCggCCCg -3'
miRNA:   3'- cagUUUCCCCAGCGa----GUa--GAGCG--GGG- -5'
29469 3' -55.9 NC_006151.1 + 31582 0.68 0.812225
Target:  5'- -aCGGGGGGGcggcgCGCUCcgcgCUC-CCCCg -3'
miRNA:   3'- caGUUUCCCCa----GCGAGua--GAGcGGGG- -5'
29469 3' -55.9 NC_006151.1 + 21405 0.68 0.812225
Target:  5'- -gCGAAGGGGcggUGCggCGUCUCggGCCUCg -3'
miRNA:   3'- caGUUUCCCCa--GCGa-GUAGAG--CGGGG- -5'
29469 3' -55.9 NC_006151.1 + 142554 0.68 0.811348
Target:  5'- -aCGAGGGGGUuggggggaaggcgCGCUCuccUCUCcgGUCCCg -3'
miRNA:   3'- caGUUUCCCCA-------------GCGAGu--AGAG--CGGGG- -5'
29469 3' -55.9 NC_006151.1 + 27077 0.68 0.808707
Target:  5'- aGUCAAAGaGGG-CGCggcgcagggcgcgCGUgUCGCCCg -3'
miRNA:   3'- -CAGUUUC-CCCaGCGa------------GUAgAGCGGGg -5'
29469 3' -55.9 NC_006151.1 + 95049 0.68 0.794386
Target:  5'- cGUCGAAGGGGcgcaggccgCGCUCGcagaGCUCCa -3'
miRNA:   3'- -CAGUUUCCCCa--------GCGAGUagagCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.