miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29469 5' -65.3 NC_006151.1 + 137138 0.66 0.524075
Target:  5'- cGCGGCGcgacGCgGCGCCGGagauggCCGCGc-- -3'
miRNA:   3'- -CGCCGC----CG-CGCGGCCgga---GGCGCauc -5'
29469 5' -65.3 NC_006151.1 + 63527 0.66 0.524075
Target:  5'- gGCGGuCGGgGaagaCGCCGGCgaCCaCGUAGc -3'
miRNA:   3'- -CGCC-GCCgC----GCGGCCGgaGGcGCAUC- -5'
29469 5' -65.3 NC_006151.1 + 75858 0.66 0.524075
Target:  5'- uCGaCGGgGCGCCccugcGUgUCCGCGUGGg -3'
miRNA:   3'- cGCcGCCgCGCGGc----CGgAGGCGCAUC- -5'
29469 5' -65.3 NC_006151.1 + 108385 0.66 0.524075
Target:  5'- -aGGcCGGUGCaccGCCGGaCgUCCGCGa-- -3'
miRNA:   3'- cgCC-GCCGCG---CGGCC-GgAGGCGCauc -5'
29469 5' -65.3 NC_006151.1 + 129624 0.66 0.524075
Target:  5'- aGCGGguCGaGCGCGUCcauGagCUCCGCGUAGu -3'
miRNA:   3'- -CGCC--GC-CGCGCGGc--Cg-GAGGCGCAUC- -5'
29469 5' -65.3 NC_006151.1 + 37031 0.66 0.524075
Target:  5'- cCGcGCGGCGC-UCGGCCUCCuccuCGUc- -3'
miRNA:   3'- cGC-CGCCGCGcGGCCGGAGGc---GCAuc -5'
29469 5' -65.3 NC_006151.1 + 37406 0.66 0.524075
Target:  5'- aCGGCGGCGC-CgGGgaCUCcCGCGaGGg -3'
miRNA:   3'- cGCCGCCGCGcGgCCg-GAG-GCGCaUC- -5'
29469 5' -65.3 NC_006151.1 + 101389 0.66 0.524075
Target:  5'- aCGGC-GCGCGCCuucuucgacGGCCUCUGgGc-- -3'
miRNA:   3'- cGCCGcCGCGCGG---------CCGGAGGCgCauc -5'
29469 5' -65.3 NC_006151.1 + 126151 0.66 0.524075
Target:  5'- gGCuGCuGGUGCugGCCGGCCUggUCGCGg-- -3'
miRNA:   3'- -CGcCG-CCGCG--CGGCCGGA--GGCGCauc -5'
29469 5' -65.3 NC_006151.1 + 130351 0.66 0.524075
Target:  5'- cGCGGCGuCGUGguugaCGGCCgcgcgcgCCGCGgcGu -3'
miRNA:   3'- -CGCCGCcGCGCg----GCCGGa------GGCGCauC- -5'
29469 5' -65.3 NC_006151.1 + 4315 0.66 0.524075
Target:  5'- cGCGG-GGCacGCgGCCGGgCUgCGCGgcGg -3'
miRNA:   3'- -CGCCgCCG--CG-CGGCCgGAgGCGCauC- -5'
29469 5' -65.3 NC_006151.1 + 63324 0.66 0.524075
Target:  5'- cGCGGUGaCGCGaaaGGCCUCCuCGgcGc -3'
miRNA:   3'- -CGCCGCcGCGCgg-CCGGAGGcGCauC- -5'
29469 5' -65.3 NC_006151.1 + 78728 0.66 0.524075
Target:  5'- cGUGG-GGCGCGCgcugCGGCCcacgUCCGcCGUc- -3'
miRNA:   3'- -CGCCgCCGCGCG----GCCGG----AGGC-GCAuc -5'
29469 5' -65.3 NC_006151.1 + 115207 0.66 0.524075
Target:  5'- cGCgGGCGcGCGCGCgaucgUGGCCgcugCCGCcgAGa -3'
miRNA:   3'- -CG-CCGC-CGCGCG-----GCCGGa---GGCGcaUC- -5'
29469 5' -65.3 NC_006151.1 + 4039 0.66 0.522232
Target:  5'- -aGGCGGCcucgcggGCGCgGGCC-CCGUccacgcuGUAGc -3'
miRNA:   3'- cgCCGCCG-------CGCGgCCGGaGGCG-------CAUC- -5'
29469 5' -65.3 NC_006151.1 + 36018 0.66 0.521311
Target:  5'- aCGGCGGCagccagggcucccgGCGCCGcggcuCCUCCgGCGaGGa -3'
miRNA:   3'- cGCCGCCG--------------CGCGGCc----GGAGG-CGCaUC- -5'
29469 5' -65.3 NC_006151.1 + 86248 0.66 0.518552
Target:  5'- uCGGCGcCGUGCUGGCCguggucgacgacgaCCGCGg-- -3'
miRNA:   3'- cGCCGCcGCGCGGCCGGa-------------GGCGCauc -5'
29469 5' -65.3 NC_006151.1 + 130858 0.66 0.514883
Target:  5'- uCGGCGGCGCggGCgGGa--CCGCaGUGGg -3'
miRNA:   3'- cGCCGCCGCG--CGgCCggaGGCG-CAUC- -5'
29469 5' -65.3 NC_006151.1 + 123118 0.66 0.514883
Target:  5'- uCGGCGGCGaGCCuGGCgCagUGCGUGc -3'
miRNA:   3'- cGCCGCCGCgCGG-CCG-GagGCGCAUc -5'
29469 5' -65.3 NC_006151.1 + 117751 0.66 0.514883
Target:  5'- cGCGGaGGUgcgaaGCGCCGGCCgagguauaggcUCCGgGcGGg -3'
miRNA:   3'- -CGCCgCCG-----CGCGGCCGG-----------AGGCgCaUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.