miRNA display CGI


Results 41 - 60 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29470 3' -56 NC_006151.1 + 17155 0.67 0.869079
Target:  5'- cACCU-GGUCGCaGAGGUCggCGGCGc- -3'
miRNA:   3'- -UGGAgCCGGUG-CUCCAGuaGCUGUag -5'
29470 3' -56 NC_006151.1 + 48383 0.67 0.861547
Target:  5'- -gCUC-GCCACcgGAGGUCAUCcugugGGCGUCg -3'
miRNA:   3'- ugGAGcCGGUG--CUCCAGUAG-----CUGUAG- -5'
29470 3' -56 NC_006151.1 + 69597 0.67 0.856928
Target:  5'- -gCUCGGCCGCGcggcgcaccagcgacAGGaUCucgcgGUCGGCGUCc -3'
miRNA:   3'- ugGAGCCGGUGC---------------UCC-AG-----UAGCUGUAG- -5'
29470 3' -56 NC_006151.1 + 142230 0.67 0.853023
Target:  5'- uCCUCGccgggucGCgACGAGG-CGUCGGuCAUCg -3'
miRNA:   3'- uGGAGC-------CGgUGCUCCaGUAGCU-GUAG- -5'
29470 3' -56 NC_006151.1 + 35105 0.67 0.849067
Target:  5'- cGCCUCGcGCCcgcGCGAGGgauuuucggacaaucUCAUUGGCGc- -3'
miRNA:   3'- -UGGAGC-CGG---UGCUCC---------------AGUAGCUGUag -5'
29470 3' -56 NC_006151.1 + 58439 0.66 0.909607
Target:  5'- cGCCUCGGUgGCGuGcGcgCGcgCGGCGUCg -3'
miRNA:   3'- -UGGAGCCGgUGCuC-Ca-GUa-GCUGUAG- -5'
29470 3' -56 NC_006151.1 + 21561 0.67 0.841008
Target:  5'- gGCCUCggcgagcccgccgagGGCCgcGCGGGGUCGaUGGCGUa -3'
miRNA:   3'- -UGGAG---------------CCGG--UGCUCCAGUaGCUGUAg -5'
29470 3' -56 NC_006151.1 + 92575 0.67 0.83773
Target:  5'- cGCUggagGGCCGCGAGGUggccccCGagGACGUCa -3'
miRNA:   3'- -UGGag--CCGGUGCUCCA------GUagCUGUAG- -5'
29470 3' -56 NC_006151.1 + 40089 0.67 0.83773
Target:  5'- cGCCggggcCGGCCccggcgaggACGGGGacucuguggagaUCGUCGGCGUCc -3'
miRNA:   3'- -UGGa----GCCGG---------UGCUCC------------AGUAGCUGUAG- -5'
29470 3' -56 NC_006151.1 + 59778 0.67 0.83773
Target:  5'- cACgUCGGCCACGAGGUacuUCucCAc- -3'
miRNA:   3'- -UGgAGCCGGUGCUCCAgu-AGcuGUag -5'
29470 3' -56 NC_006151.1 + 11226 0.68 0.829406
Target:  5'- gGCUUCucccgGGCCGCGAGGgCcgCGGCGg- -3'
miRNA:   3'- -UGGAG-----CCGGUGCUCCaGuaGCUGUag -5'
29470 3' -56 NC_006151.1 + 133472 0.68 0.829406
Target:  5'- gGCCcgcgaggCGGCCGCGGGcGUCAccUUGGCGg- -3'
miRNA:   3'- -UGGa------GCCGGUGCUC-CAGU--AGCUGUag -5'
29470 3' -56 NC_006151.1 + 73799 0.68 0.824325
Target:  5'- cACCUCGGCgccCAcgucgcgcauggcgcCGAGGUgGUCGGCGc- -3'
miRNA:   3'- -UGGAGCCG---GU---------------GCUCCAgUAGCUGUag -5'
29470 3' -56 NC_006151.1 + 116850 0.68 0.820902
Target:  5'- uUCUCGGCgGCGGGGaaggCcgCGuCGUCg -3'
miRNA:   3'- uGGAGCCGgUGCUCCa---GuaGCuGUAG- -5'
29470 3' -56 NC_006151.1 + 116404 0.68 0.812225
Target:  5'- uCCUCGGCCACGGcGUUGagcuuguagcUCGGCAg- -3'
miRNA:   3'- uGGAGCCGGUGCUcCAGU----------AGCUGUag -5'
29470 3' -56 NC_006151.1 + 129892 0.68 0.803383
Target:  5'- cACCUCGGUCGCGuucagcacGG-CGuacUCGGCGUCc -3'
miRNA:   3'- -UGGAGCCGGUGCu-------CCaGU---AGCUGUAG- -5'
29470 3' -56 NC_006151.1 + 64624 0.68 0.803383
Target:  5'- cGCCgcCGGCCGCGGGG-CG-CGGCGc- -3'
miRNA:   3'- -UGGa-GCCGGUGCUCCaGUaGCUGUag -5'
29470 3' -56 NC_006151.1 + 5074 0.68 0.803383
Target:  5'- gGCCgagGGCCGCGGGG-CcgCGGCGg- -3'
miRNA:   3'- -UGGag-CCGGUGCUCCaGuaGCUGUag -5'
29470 3' -56 NC_006151.1 + 19342 0.68 0.803383
Target:  5'- gGCCcgCGGCCcCGAGG-CGUCGuGCAg- -3'
miRNA:   3'- -UGGa-GCCGGuGCUCCaGUAGC-UGUag -5'
29470 3' -56 NC_006151.1 + 125101 0.68 0.794386
Target:  5'- uACCUCGcCCGCGGGGgcuUCGugGUg -3'
miRNA:   3'- -UGGAGCcGGUGCUCCaguAGCugUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.