Results 1 - 20 of 244 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29470 | 5' | -58.6 | NC_006151.1 | + | 2232 | 0.67 | 0.717733 |
Target: 5'- -cGGCGGCGGCGCggACGcUGGUCu-- -3' miRNA: 3'- acCCGCUGCUGCGgaUGC-ACCGGuug -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 2299 | 0.74 | 0.33647 |
Target: 5'- gGcGGCGACGGCGCC--CGgGGUCAGCa -3' miRNA: 3'- aC-CCGCUGCUGCGGauGCaCCGGUUG- -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 3135 | 0.69 | 0.627629 |
Target: 5'- cGGGCGcGgGGCGCCcucgGCG-GGCuCGGCg -3' miRNA: 3'- aCCCGC-UgCUGCGGa---UGCaCCG-GUUG- -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 3262 | 0.7 | 0.557392 |
Target: 5'- gGGGCGccGCGGCGCgCggcgAUGUGcGCCAGg -3' miRNA: 3'- aCCCGC--UGCUGCG-Ga---UGCAC-CGGUUg -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 3383 | 0.68 | 0.667989 |
Target: 5'- -aGGCGGCGAgggcCGCCU-CGgagGGCCGcgGCg -3' miRNA: 3'- acCCGCUGCU----GCGGAuGCa--CCGGU--UG- -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 3571 | 0.67 | 0.727503 |
Target: 5'- aGGGa-GCGGCGCUUGCGccggGGCCc-- -3' miRNA: 3'- aCCCgcUGCUGCGGAUGCa---CCGGuug -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 3899 | 0.69 | 0.587319 |
Target: 5'- cUGGGaCGACGAgGCCgggcugcuCG-GGCCAGa -3' miRNA: 3'- -ACCC-GCUGCUgCGGau------GCaCCGGUUg -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 4107 | 0.69 | 0.626619 |
Target: 5'- aGGGCGACaGAguccgcggccugcCGCCgcuCGgccgGGCCGGCc -3' miRNA: 3'- aCCCGCUG-CU-------------GCGGau-GCa---CCGGUUG- -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 4258 | 0.66 | 0.784126 |
Target: 5'- aGGGCagcaggcgcucGAgGACGCC-GCGgcaGGCCAGg -3' miRNA: 3'- aCCCG-----------CUgCUGCGGaUGCa--CCGGUUg -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 4541 | 0.66 | 0.810759 |
Target: 5'- cUGGGCGGCcauGGCGUCcccgAUGUGcGgCAGCg -3' miRNA: 3'- -ACCCGCUG---CUGCGGa---UGCAC-CgGUUG- -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 5079 | 0.69 | 0.597366 |
Target: 5'- aGGGCcGCGGgGCCgcgGCGgGcGCCGGCg -3' miRNA: 3'- aCCCGcUGCUgCGGa--UGCaC-CGGUUG- -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 5348 | 0.68 | 0.647834 |
Target: 5'- aGGGCGcccucuccggcGCGGCGCCgGCGgGGCUg-- -3' miRNA: 3'- aCCCGC-----------UGCUGCGGaUGCaCCGGuug -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 5859 | 0.66 | 0.802029 |
Target: 5'- aGGGgGACGAgCGCC--CGgGGCCGc- -3' miRNA: 3'- aCCCgCUGCU-GCGGauGCaCCGGUug -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 10013 | 0.66 | 0.802029 |
Target: 5'- aGcGGCGGCGGCgGUCgcCGcGGCCAGg -3' miRNA: 3'- aC-CCGCUGCUG-CGGauGCaCCGGUUg -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 10207 | 0.66 | 0.765691 |
Target: 5'- cGGGCGGCGGCuGCagagGCGgcuGCgGACg -3' miRNA: 3'- aCCCGCUGCUG-CGga--UGCac-CGgUUG- -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 10405 | 0.66 | 0.793148 |
Target: 5'- gGGGgGAgagcggggUGACGCC-GCGggugGGCCGAg -3' miRNA: 3'- aCCCgCU--------GCUGCGGaUGCa---CCGGUUg -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 14063 | 0.66 | 0.784126 |
Target: 5'- gGGGUG-CGugGCg-GCccGGCCGACg -3' miRNA: 3'- aCCCGCuGCugCGgaUGcaCCGGUUG- -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 15057 | 0.68 | 0.697989 |
Target: 5'- gGGGCccCGGCGCCUucuGCGcGGCCc-- -3' miRNA: 3'- aCCCGcuGCUGCGGA---UGCaCCGGuug -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 15086 | 0.72 | 0.452575 |
Target: 5'- -uGGCGccccgacacGCGGCGCCU-CGgGGCCGACg -3' miRNA: 3'- acCCGC---------UGCUGCGGAuGCaCCGGUUG- -5' |
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29470 | 5' | -58.6 | NC_006151.1 | + | 15628 | 0.7 | 0.557392 |
Target: 5'- cGGG-GACGACuuugacgggGCCaGCGUGGgCGACg -3' miRNA: 3'- aCCCgCUGCUG---------CGGaUGCACCgGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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