miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29470 5' -58.6 NC_006151.1 + 2232 0.67 0.717733
Target:  5'- -cGGCGGCGGCGCggACGcUGGUCu-- -3'
miRNA:   3'- acCCGCUGCUGCGgaUGC-ACCGGuug -5'
29470 5' -58.6 NC_006151.1 + 2299 0.74 0.33647
Target:  5'- gGcGGCGACGGCGCC--CGgGGUCAGCa -3'
miRNA:   3'- aC-CCGCUGCUGCGGauGCaCCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 3135 0.69 0.627629
Target:  5'- cGGGCGcGgGGCGCCcucgGCG-GGCuCGGCg -3'
miRNA:   3'- aCCCGC-UgCUGCGGa---UGCaCCG-GUUG- -5'
29470 5' -58.6 NC_006151.1 + 3262 0.7 0.557392
Target:  5'- gGGGCGccGCGGCGCgCggcgAUGUGcGCCAGg -3'
miRNA:   3'- aCCCGC--UGCUGCG-Ga---UGCAC-CGGUUg -5'
29470 5' -58.6 NC_006151.1 + 3383 0.68 0.667989
Target:  5'- -aGGCGGCGAgggcCGCCU-CGgagGGCCGcgGCg -3'
miRNA:   3'- acCCGCUGCU----GCGGAuGCa--CCGGU--UG- -5'
29470 5' -58.6 NC_006151.1 + 3571 0.67 0.727503
Target:  5'- aGGGa-GCGGCGCUUGCGccggGGCCc-- -3'
miRNA:   3'- aCCCgcUGCUGCGGAUGCa---CCGGuug -5'
29470 5' -58.6 NC_006151.1 + 3899 0.69 0.587319
Target:  5'- cUGGGaCGACGAgGCCgggcugcuCG-GGCCAGa -3'
miRNA:   3'- -ACCC-GCUGCUgCGGau------GCaCCGGUUg -5'
29470 5' -58.6 NC_006151.1 + 4107 0.69 0.626619
Target:  5'- aGGGCGACaGAguccgcggccugcCGCCgcuCGgccgGGCCGGCc -3'
miRNA:   3'- aCCCGCUG-CU-------------GCGGau-GCa---CCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 4258 0.66 0.784126
Target:  5'- aGGGCagcaggcgcucGAgGACGCC-GCGgcaGGCCAGg -3'
miRNA:   3'- aCCCG-----------CUgCUGCGGaUGCa--CCGGUUg -5'
29470 5' -58.6 NC_006151.1 + 4541 0.66 0.810759
Target:  5'- cUGGGCGGCcauGGCGUCcccgAUGUGcGgCAGCg -3'
miRNA:   3'- -ACCCGCUG---CUGCGGa---UGCAC-CgGUUG- -5'
29470 5' -58.6 NC_006151.1 + 5079 0.69 0.597366
Target:  5'- aGGGCcGCGGgGCCgcgGCGgGcGCCGGCg -3'
miRNA:   3'- aCCCGcUGCUgCGGa--UGCaC-CGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 5348 0.68 0.647834
Target:  5'- aGGGCGcccucuccggcGCGGCGCCgGCGgGGCUg-- -3'
miRNA:   3'- aCCCGC-----------UGCUGCGGaUGCaCCGGuug -5'
29470 5' -58.6 NC_006151.1 + 5859 0.66 0.802029
Target:  5'- aGGGgGACGAgCGCC--CGgGGCCGc- -3'
miRNA:   3'- aCCCgCUGCU-GCGGauGCaCCGGUug -5'
29470 5' -58.6 NC_006151.1 + 10013 0.66 0.802029
Target:  5'- aGcGGCGGCGGCgGUCgcCGcGGCCAGg -3'
miRNA:   3'- aC-CCGCUGCUG-CGGauGCaCCGGUUg -5'
29470 5' -58.6 NC_006151.1 + 10207 0.66 0.765691
Target:  5'- cGGGCGGCGGCuGCagagGCGgcuGCgGACg -3'
miRNA:   3'- aCCCGCUGCUG-CGga--UGCac-CGgUUG- -5'
29470 5' -58.6 NC_006151.1 + 10405 0.66 0.793148
Target:  5'- gGGGgGAgagcggggUGACGCC-GCGggugGGCCGAg -3'
miRNA:   3'- aCCCgCU--------GCUGCGGaUGCa---CCGGUUg -5'
29470 5' -58.6 NC_006151.1 + 14063 0.66 0.784126
Target:  5'- gGGGUG-CGugGCg-GCccGGCCGACg -3'
miRNA:   3'- aCCCGCuGCugCGgaUGcaCCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 15057 0.68 0.697989
Target:  5'- gGGGCccCGGCGCCUucuGCGcGGCCc-- -3'
miRNA:   3'- aCCCGcuGCUGCGGA---UGCaCCGGuug -5'
29470 5' -58.6 NC_006151.1 + 15086 0.72 0.452575
Target:  5'- -uGGCGccccgacacGCGGCGCCU-CGgGGCCGACg -3'
miRNA:   3'- acCCGC---------UGCUGCGGAuGCaCCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 15628 0.7 0.557392
Target:  5'- cGGG-GACGACuuugacgggGCCaGCGUGGgCGACg -3'
miRNA:   3'- aCCCgCUGCUG---------CGGaUGCACCgGUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.