miRNA display CGI


Results 21 - 40 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29470 5' -58.6 NC_006151.1 + 121661 0.66 0.802029
Target:  5'- cGGGCgGGCGGagggggggaGCgaGCG-GGCCGACc -3'
miRNA:   3'- aCCCG-CUGCUg--------CGgaUGCaCCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 118886 0.66 0.802029
Target:  5'- cGcGGCGGCGACGCg-GCc--GCCGGCg -3'
miRNA:   3'- aC-CCGCUGCUGCGgaUGcacCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 99589 0.66 0.802029
Target:  5'- gGuGGCGGCGgccgaGCGCC-GCGccgGGCUGGCg -3'
miRNA:   3'- aC-CCGCUGC-----UGCGGaUGCa--CCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 139217 0.66 0.796718
Target:  5'- -uGGCGGCGACGCUgccgcacaucgcgcGCGUcuccGGCgCGACg -3'
miRNA:   3'- acCCGCUGCUGCGGa-------------UGCA----CCG-GUUG- -5'
29470 5' -58.6 NC_006151.1 + 55643 0.66 0.796718
Target:  5'- aGGaGCuGAuccgcugcuucaagcUGACGC--GCGUGGCCAACa -3'
miRNA:   3'- aCC-CG-CU---------------GCUGCGgaUGCACCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 127541 0.66 0.793148
Target:  5'- gGGGCccaGGgGGCGUCgucguCGUGGCCGc- -3'
miRNA:   3'- aCCCG---CUgCUGCGGau---GCACCGGUug -5'
29470 5' -58.6 NC_006151.1 + 10405 0.66 0.793148
Target:  5'- gGGGgGAgagcggggUGACGCC-GCGggugGGCCGAg -3'
miRNA:   3'- aCCCgCU--------GCUGCGGaUGCa---CCGGUUg -5'
29470 5' -58.6 NC_006151.1 + 54821 0.66 0.793148
Target:  5'- cUGGcGCG-CGACGCgCUcACG-GGCgAGCg -3'
miRNA:   3'- -ACC-CGCuGCUGCG-GA-UGCaCCGgUUG- -5'
29470 5' -58.6 NC_006151.1 + 75269 0.66 0.793148
Target:  5'- cGGGCuccuGGCGcaGCGCCgccaGCGUGGCg--- -3'
miRNA:   3'- aCCCG----CUGC--UGCGGa---UGCACCGguug -5'
29470 5' -58.6 NC_006151.1 + 78114 0.66 0.793148
Target:  5'- gGGGCG--GACGCCauccUGCGgcgGGCCg-- -3'
miRNA:   3'- aCCCGCugCUGCGG----AUGCa--CCGGuug -5'
29470 5' -58.6 NC_006151.1 + 89143 0.66 0.793148
Target:  5'- gGGGCGuCGAgaccgcgccCGCCUcggGCGaGGCgGGCg -3'
miRNA:   3'- aCCCGCuGCU---------GCGGA---UGCaCCGgUUG- -5'
29470 5' -58.6 NC_006151.1 + 98957 0.66 0.793148
Target:  5'- cGGGCcguggacgaGGCGGCGCUggugcccguggGCGaGGUCAACg -3'
miRNA:   3'- aCCCG---------CUGCUGCGGa----------UGCaCCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 4258 0.66 0.784126
Target:  5'- aGGGCagcaggcgcucGAgGACGCC-GCGgcaGGCCAGg -3'
miRNA:   3'- aCCCG-----------CUgCUGCGGaUGCa--CCGGUUg -5'
29470 5' -58.6 NC_006151.1 + 14063 0.66 0.784126
Target:  5'- gGGGUG-CGugGCg-GCccGGCCGACg -3'
miRNA:   3'- aCCCGCuGCugCGgaUGcaCCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 51184 0.66 0.784126
Target:  5'- aGGGCccgcuccACGACGa--GgGUGGCCAGCa -3'
miRNA:   3'- aCCCGc------UGCUGCggaUgCACCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 56048 0.66 0.784126
Target:  5'- aGGGCGGCG-CGCUgACGcUGcGCCu-- -3'
miRNA:   3'- aCCCGCUGCuGCGGaUGC-AC-CGGuug -5'
29470 5' -58.6 NC_006151.1 + 84576 0.66 0.784126
Target:  5'- aGGGCcucGACGcGCGCCUcGCGcUGGCgCAcGCg -3'
miRNA:   3'- aCCCG---CUGC-UGCGGA-UGC-ACCG-GU-UG- -5'
29470 5' -58.6 NC_006151.1 + 97468 0.66 0.784126
Target:  5'- cGGGCaGGCGGCucaccGCC-ACGUGGacgcgCAGCg -3'
miRNA:   3'- aCCCG-CUGCUG-----CGGaUGCACCg----GUUG- -5'
29470 5' -58.6 NC_006151.1 + 119179 0.66 0.784126
Target:  5'- gGaGGUgGACGACGCggGCGccGCCGACg -3'
miRNA:   3'- aC-CCG-CUGCUGCGgaUGCacCGGUUG- -5'
29470 5' -58.6 NC_006151.1 + 98767 0.66 0.784126
Target:  5'- uUGuGCagGACGGCcuGCgCUACGUGGCgCAGCa -3'
miRNA:   3'- -ACcCG--CUGCUG--CG-GAUGCACCG-GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.