miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29471 3' -54 NC_006151.1 + 78757 0.66 0.954428
Target:  5'- cCGUCUGCGccgaGGcgGCGCUCCugACCGc -3'
miRNA:   3'- -GUAGAUGUugagCCa-CGCGAGG--UGGC- -5'
29471 3' -54 NC_006151.1 + 98638 0.66 0.945994
Target:  5'- --cCUuCGACgaggcccuggCGGgcgcGCGCUCCGCCGa -3'
miRNA:   3'- guaGAuGUUGa---------GCCa---CGCGAGGUGGC- -5'
29471 3' -54 NC_006151.1 + 85595 0.66 0.945547
Target:  5'- --aCUucCAGCUCGGcGCGCUcgugcccaacgcgCCGCCGc -3'
miRNA:   3'- guaGAu-GUUGAGCCaCGCGA-------------GGUGGC- -5'
29471 3' -54 NC_006151.1 + 21475 0.66 0.941885
Target:  5'- gCGUCgcCGGCUCGGgcaggcggccgggggGCGCgggcgUCACCGg -3'
miRNA:   3'- -GUAGauGUUGAGCCa--------------CGCGa----GGUGGC- -5'
29471 3' -54 NC_006151.1 + 122987 0.66 0.941416
Target:  5'- gCGUCgGCGACgaagaCGGgcccgGCGCgcccCCGCCGg -3'
miRNA:   3'- -GUAGaUGUUGa----GCCa----CGCGa---GGUGGC- -5'
29471 3' -54 NC_006151.1 + 70860 0.66 0.941416
Target:  5'- --cCUGCGcgcGCUcaCGG-GCGcCUCCGCCGa -3'
miRNA:   3'- guaGAUGU---UGA--GCCaCGC-GAGGUGGC- -5'
29471 3' -54 NC_006151.1 + 20094 0.67 0.936593
Target:  5'- uCAUCUugGGCUgGGggacggGCGCcCCGgCGa -3'
miRNA:   3'- -GUAGAugUUGAgCCa-----CGCGaGGUgGC- -5'
29471 3' -54 NC_006151.1 + 62121 0.67 0.91484
Target:  5'- gGUCggGCugauGCUCGGcGUGCUCCugGCCa -3'
miRNA:   3'- gUAGa-UGu---UGAGCCaCGCGAGG--UGGc -5'
29471 3' -54 NC_006151.1 + 136900 0.68 0.902489
Target:  5'- ----cACGGCUgGGUGCGCgCCcCCGa -3'
miRNA:   3'- guagaUGUUGAgCCACGCGaGGuGGC- -5'
29471 3' -54 NC_006151.1 + 20747 0.68 0.882166
Target:  5'- ----aGCAGC-CGGcGCGcCUCCACCGc -3'
miRNA:   3'- guagaUGUUGaGCCaCGC-GAGGUGGC- -5'
29471 3' -54 NC_006151.1 + 55133 0.68 0.882166
Target:  5'- aCAUCgGCGACaucacggagaCGGUGCGCUCgUACCu -3'
miRNA:   3'- -GUAGaUGUUGa---------GCCACGCGAG-GUGGc -5'
29471 3' -54 NC_006151.1 + 28121 0.68 0.874927
Target:  5'- --cCUcguCGGCUCGGggcGCGCUCCGCg- -3'
miRNA:   3'- guaGAu--GUUGAGCCa--CGCGAGGUGgc -5'
29471 3' -54 NC_006151.1 + 58952 0.68 0.874927
Target:  5'- aGUCcACGGCccccUCGGUGCGCggCCACg- -3'
miRNA:   3'- gUAGaUGUUG----AGCCACGCGa-GGUGgc -5'
29471 3' -54 NC_006151.1 + 39332 0.68 0.874927
Target:  5'- -cUCUgcucGCGGCUCGGcgcgGCGCggCGCCGg -3'
miRNA:   3'- guAGA----UGUUGAGCCa---CGCGagGUGGC- -5'
29471 3' -54 NC_006151.1 + 104619 0.69 0.857435
Target:  5'- gAUCUGCcgcgcGCUCGaggaggugacguacGUGCGCgcggCCGCCGa -3'
miRNA:   3'- gUAGAUGu----UGAGC--------------CACGCGa---GGUGGC- -5'
29471 3' -54 NC_006151.1 + 76607 0.69 0.841319
Target:  5'- gAUCUGCcccgacggcaggauGGC-CGG-GCGCUCCAUCGu -3'
miRNA:   3'- gUAGAUG--------------UUGaGCCaCGCGAGGUGGC- -5'
29471 3' -54 NC_006151.1 + 84168 0.69 0.835489
Target:  5'- ----cGCGACUCGGcGCGCcuccucgCCGCCGc -3'
miRNA:   3'- guagaUGUUGAGCCaCGCGa------GGUGGC- -5'
29471 3' -54 NC_006151.1 + 104153 0.7 0.80948
Target:  5'- --gCUACGACgccgCGGagcUGCGCcCCGCCGc -3'
miRNA:   3'- guaGAUGUUGa---GCC---ACGCGaGGUGGC- -5'
29471 3' -54 NC_006151.1 + 139301 0.7 0.800467
Target:  5'- gCGUCUGCGGCgc-GUGCuGCUCgACCGu -3'
miRNA:   3'- -GUAGAUGUUGagcCACG-CGAGgUGGC- -5'
29471 3' -54 NC_006151.1 + 73465 0.71 0.762932
Target:  5'- gCAggUGCAGCccgccgccgcucUCGGUGCGCgCCACCu -3'
miRNA:   3'- -GUagAUGUUG------------AGCCACGCGaGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.