Results 21 - 40 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29471 | 5' | -58.2 | NC_006151.1 | + | 59148 | 0.69 | 0.595623 |
Target: 5'- cGCgGGCGGGUCCAGgccggcgUCGCGCaGCa- -3' miRNA: 3'- aCG-CCGUCUAGGUCa------GGUGCGaCGag -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 104608 | 0.69 | 0.616094 |
Target: 5'- cGCGGCgccgAGAUCUg--CCGCGC-GCUCg -3' miRNA: 3'- aCGCCG----UCUAGGucaGGUGCGaCGAG- -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 4048 | 0.69 | 0.605849 |
Target: 5'- cGCGggcGCGGGcCCcGUCCACGCUGUa- -3' miRNA: 3'- aCGC---CGUCUaGGuCAGGUGCGACGag -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 20207 | 0.69 | 0.605849 |
Target: 5'- cGCGcGCAGcgCCGGgCCGCGCagGCg- -3' miRNA: 3'- aCGC-CGUCuaGGUCaGGUGCGa-CGag -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 70110 | 0.69 | 0.57526 |
Target: 5'- cGCGaGCGGGUCCAcGcCCGCGCgccGCa- -3' miRNA: 3'- aCGC-CGUCUAGGU-CaGGUGCGa--CGag -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 49110 | 0.69 | 0.616094 |
Target: 5'- cGCGGCGG-UCCGGgcgacguacCCgACGCUGCcCg -3' miRNA: 3'- aCGCCGUCuAGGUCa--------GG-UGCGACGaG- -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 132470 | 0.68 | 0.677541 |
Target: 5'- cGCGGCAGuaggcGUCCAGcaggCGCGCguagcGCUCc -3' miRNA: 3'- aCGCCGUC-----UAGGUCag--GUGCGa----CGAG- -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 51967 | 0.68 | 0.645846 |
Target: 5'- cGCGGCGuGUCCAGcgaggcgagcagcUCCGCGgUGC-Cg -3' miRNA: 3'- aCGCCGUcUAGGUC-------------AGGUGCgACGaG- -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 49213 | 0.68 | 0.646871 |
Target: 5'- gUGCGGCgcgGGGUCCccGGcucCCACGCcccGCUCg -3' miRNA: 3'- -ACGCCG---UCUAGG--UCa--GGUGCGa--CGAG- -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 85156 | 0.68 | 0.646871 |
Target: 5'- gUGCGGCAGGgggCCGGcgCCGCGg-GCg- -3' miRNA: 3'- -ACGCCGUCUa--GGUCa-GGUGCgaCGag -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 4282 | 0.68 | 0.657117 |
Target: 5'- cGCGGCAGG-CCAggacgcaggcGUCCGC-CaGCUCg -3' miRNA: 3'- aCGCCGUCUaGGU----------CAGGUGcGaCGAG- -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 2386 | 0.68 | 0.667344 |
Target: 5'- gGcCGGCAGGcccUCgGGgCCGCGgaGCUCg -3' miRNA: 3'- aC-GCCGUCU---AGgUCaGGUGCgaCGAG- -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 56295 | 0.67 | 0.737626 |
Target: 5'- cGCGGCGGAggCGGacgCCGCGCggUGCc- -3' miRNA: 3'- aCGCCGUCUagGUCa--GGUGCG--ACGag -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 65188 | 0.67 | 0.747371 |
Target: 5'- aGC-GCGGGUCCGcGagCGCGCUGCg- -3' miRNA: 3'- aCGcCGUCUAGGU-CagGUGCGACGag -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 53266 | 0.67 | 0.747371 |
Target: 5'- cGCGGCA----CAGcugCCGCGCgUGCUCg -3' miRNA: 3'- aCGCCGUcuagGUCa--GGUGCG-ACGAG- -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 36376 | 0.67 | 0.741535 |
Target: 5'- aGCGGCAGAggCCGGggcccccggcggccCCGgGC-GCUCg -3' miRNA: 3'- aCGCCGUCUa-GGUCa-------------GGUgCGaCGAG- -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 13112 | 0.67 | 0.717868 |
Target: 5'- cGCGGCGGGUCa----CGCGC-GCUCc -3' miRNA: 3'- aCGCCGUCUAGgucagGUGCGaCGAG- -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 120847 | 0.67 | 0.717868 |
Target: 5'- cGUGGguGGccacguacacgUCCAG-CCAC-CUGCUCc -3' miRNA: 3'- aCGCCguCU-----------AGGUCaGGUGcGACGAG- -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 69991 | 0.67 | 0.727788 |
Target: 5'- gGCGGCAGcgUCAG--CACGCU-CUCg -3' miRNA: 3'- aCGCCGUCuaGGUCagGUGCGAcGAG- -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 72630 | 0.67 | 0.727788 |
Target: 5'- -cCGGCGG-UCCcgcGGUCC-CGCgGCUCa -3' miRNA: 3'- acGCCGUCuAGG---UCAGGuGCGaCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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