Results 61 - 65 of 65 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 29471 | 5' | -58.2 | NC_006151.1 | + | 131660 | 0.66 | 0.757014 |
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Target: 5'- cGCcGCAGAUCCGa-CCGCGCgcgGCgUCa -3' miRNA: 3'- aCGcCGUCUAGGUcaGGUGCGa--CG-AG- -5' |
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| 29471 | 5' | -58.2 | NC_006151.1 | + | 58607 | 0.66 | 0.757014 |
|
Target: 5'- cGUGGcCGGGUCC-GUCUcgaaGCGCagcgGCUCg -3' miRNA: 3'- aCGCC-GUCUAGGuCAGG----UGCGa---CGAG- -5' |
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| 29471 | 5' | -58.2 | NC_006151.1 | + | 24738 | 0.66 | 0.766546 |
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Target: 5'- gUGCGGCAGGaCCAGg-CACGUcGC-Cg -3' miRNA: 3'- -ACGCCGUCUaGGUCagGUGCGaCGaG- -5' |
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| 29471 | 5' | -58.2 | NC_006151.1 | + | 64246 | 0.66 | 0.766546 |
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Target: 5'- cGaCGGCGGcgCgGG-CCACGCU-CUCg -3' miRNA: 3'- aC-GCCGUCuaGgUCaGGUGCGAcGAG- -5' |
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| 29471 | 5' | -58.2 | NC_006151.1 | + | 52395 | 0.65 | 0.8007 |
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Target: 5'- gGCGGCGGGcgCCg--CCGCGCccgagaagucaaagUGCUCc -3' miRNA: 3'- aCGCCGUCUa-GGucaGGUGCG--------------ACGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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