Results 61 - 65 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29471 | 5' | -58.2 | NC_006151.1 | + | 93612 | 0.73 | 0.37095 |
Target: 5'- cUGCaGCAG--CCGGUCCGCGCUGUa- -3' miRNA: 3'- -ACGcCGUCuaGGUCAGGUGCGACGag -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 74895 | 0.74 | 0.33182 |
Target: 5'- cGgGGCcagccGAUgCCGGUCCACGCUgaGCUCg -3' miRNA: 3'- aCgCCGu----CUA-GGUCAGGUGCGA--CGAG- -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 97149 | 0.75 | 0.288983 |
Target: 5'- aGCGGCAGGUCCAccgagCCGCaGC-GCUCg -3' miRNA: 3'- aCGCCGUCUAGGUca---GGUG-CGaCGAG- -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 58165 | 0.8 | 0.144593 |
Target: 5'- gGCGGUAGAgcgccaCCAGcgCCGCGUUGCUCa -3' miRNA: 3'- aCGCCGUCUa-----GGUCa-GGUGCGACGAG- -5' |
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29471 | 5' | -58.2 | NC_006151.1 | + | 54311 | 1.1 | 0.001217 |
Target: 5'- gUGCGGCAGAUCCAGUCCACGCUGCUCa -3' miRNA: 3'- -ACGCCGUCUAGGUCAGGUGCGACGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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