miRNA display CGI


Results 41 - 60 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29471 5' -58.2 NC_006151.1 + 72630 0.67 0.727788
Target:  5'- -cCGGCGG-UCCcgcGGUCC-CGCgGCUCa -3'
miRNA:   3'- acGCCGUCuAGG---UCAGGuGCGaCGAG- -5'
29471 5' -58.2 NC_006151.1 + 73461 0.67 0.707874
Target:  5'- aGCuGCAGGUgCAGcCCGcCGCcGCUCu -3'
miRNA:   3'- aCGcCGUCUAgGUCaGGU-GCGaCGAG- -5'
29471 5' -58.2 NC_006151.1 + 74895 0.74 0.33182
Target:  5'- cGgGGCcagccGAUgCCGGUCCACGCUgaGCUCg -3'
miRNA:   3'- aCgCCGu----CUA-GGUCAGGUGCGA--CGAG- -5'
29471 5' -58.2 NC_006151.1 + 77438 0.66 0.766546
Target:  5'- cGCGGgAGAUCggcaAGUucgggcUCACGCUGCg- -3'
miRNA:   3'- aCGCCgUCUAGg---UCA------GGUGCGACGag -5'
29471 5' -58.2 NC_006151.1 + 78069 0.7 0.555059
Target:  5'- cGCGGCGGGagCCuGUCCcUGCagaUGCUCu -3'
miRNA:   3'- aCGCCGUCUa-GGuCAGGuGCG---ACGAG- -5'
29471 5' -58.2 NC_006151.1 + 78194 0.7 0.514364
Target:  5'- cGCGGCGGAcCCcuucuucgggacgGGcUCCACGUcGCUCa -3'
miRNA:   3'- aCGCCGUCUaGG-------------UC-AGGUGCGaCGAG- -5'
29471 5' -58.2 NC_006151.1 + 85156 0.68 0.646871
Target:  5'- gUGCGGCAGGgggCCGGcgCCGCGg-GCg- -3'
miRNA:   3'- -ACGCCGUCUa--GGUCa-GGUGCgaCGag -5'
29471 5' -58.2 NC_006151.1 + 88088 0.66 0.757014
Target:  5'- gGCGGCAGGUgUAGUCgACGg-GCcCg -3'
miRNA:   3'- aCGCCGUCUAgGUCAGgUGCgaCGaG- -5'
29471 5' -58.2 NC_006151.1 + 89898 0.67 0.697816
Target:  5'- gGCGGUGGggUCGGcguccgcguucUCCACGCUGUa- -3'
miRNA:   3'- aCGCCGUCuaGGUC-----------AGGUGCGACGag -5'
29471 5' -58.2 NC_006151.1 + 93612 0.73 0.37095
Target:  5'- cUGCaGCAG--CCGGUCCGCGCUGUa- -3'
miRNA:   3'- -ACGcCGUCuaGGUCAGGUGCGACGag -5'
29471 5' -58.2 NC_006151.1 + 93654 0.66 0.757014
Target:  5'- gGcCGGCAGGUCCAGcaggaggcugUCGCGCgggGCg- -3'
miRNA:   3'- aC-GCCGUCUAGGUCa---------GGUGCGa--CGag -5'
29471 5' -58.2 NC_006151.1 + 93999 0.66 0.757014
Target:  5'- uUGCGGCGGAUggCCucGUCC-CGCaGCg- -3'
miRNA:   3'- -ACGCCGUCUA--GGu-CAGGuGCGaCGag -5'
29471 5' -58.2 NC_006151.1 + 94290 0.7 0.534079
Target:  5'- aGCGGCAGGUCCgucucgagccagcGGUuggCCACGCUcaGCg- -3'
miRNA:   3'- aCGCCGUCUAGG-------------UCA---GGUGCGA--CGag -5'
29471 5' -58.2 NC_006151.1 + 97149 0.75 0.288983
Target:  5'- aGCGGCAGGUCCAccgagCCGCaGC-GCUCg -3'
miRNA:   3'- aCGCCGUCUAGGUca---GGUG-CGaCGAG- -5'
29471 5' -58.2 NC_006151.1 + 103029 0.67 0.747371
Target:  5'- aGCGccuCGGggCCuGGUUCGCGCUGCUg -3'
miRNA:   3'- aCGCc--GUCuaGG-UCAGGUGCGACGAg -5'
29471 5' -58.2 NC_006151.1 + 104608 0.69 0.616094
Target:  5'- cGCGGCgccgAGAUCUg--CCGCGC-GCUCg -3'
miRNA:   3'- aCGCCG----UCUAGGucaGGUGCGaCGAG- -5'
29471 5' -58.2 NC_006151.1 + 105613 0.7 0.525172
Target:  5'- cGCGGUGGAUCCcgcccaAGUacgccgccuaCCGCgaGCUGCUCa -3'
miRNA:   3'- aCGCCGUCUAGG------UCA----------GGUG--CGACGAG- -5'
29471 5' -58.2 NC_006151.1 + 113607 0.7 0.535072
Target:  5'- cGUGGCcGAgcgCCAGgcggacCCGCGCgUGCUCu -3'
miRNA:   3'- aCGCCGuCUa--GGUCa-----GGUGCG-ACGAG- -5'
29471 5' -58.2 NC_006151.1 + 115178 0.67 0.747371
Target:  5'- cGCGGCAGGgggcgcUCCAG-CCAgCGCgccGCg- -3'
miRNA:   3'- aCGCCGUCU------AGGUCaGGU-GCGa--CGag -5'
29471 5' -58.2 NC_006151.1 + 120847 0.67 0.717868
Target:  5'- cGUGGguGGccacguacacgUCCAG-CCAC-CUGCUCc -3'
miRNA:   3'- aCGCCguCU-----------AGGUCaGGUGcGACGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.