miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29471 5' -58.2 NC_006151.1 + 53266 0.67 0.747371
Target:  5'- cGCGGCA----CAGcugCCGCGCgUGCUCg -3'
miRNA:   3'- aCGCCGUcuagGUCa--GGUGCG-ACGAG- -5'
29471 5' -58.2 NC_006151.1 + 65188 0.67 0.747371
Target:  5'- aGC-GCGGGUCCGcGagCGCGCUGCg- -3'
miRNA:   3'- aCGcCGUCUAGGU-CagGUGCGACGag -5'
29471 5' -58.2 NC_006151.1 + 103029 0.67 0.747371
Target:  5'- aGCGccuCGGggCCuGGUUCGCGCUGCUg -3'
miRNA:   3'- aCGCc--GUCuaGG-UCAGGUGCGACGAg -5'
29471 5' -58.2 NC_006151.1 + 115178 0.67 0.747371
Target:  5'- cGCGGCAGGgggcgcUCCAG-CCAgCGCgccGCg- -3'
miRNA:   3'- aCGCCGUCU------AGGUCaGGU-GCGa--CGag -5'
29471 5' -58.2 NC_006151.1 + 36376 0.67 0.741535
Target:  5'- aGCGGCAGAggCCGGggcccccggcggccCCGgGC-GCUCg -3'
miRNA:   3'- aCGCCGUCUa-GGUCa-------------GGUgCGaCGAG- -5'
29471 5' -58.2 NC_006151.1 + 56295 0.67 0.737626
Target:  5'- cGCGGCGGAggCGGacgCCGCGCggUGCc- -3'
miRNA:   3'- aCGCCGUCUagGUCa--GGUGCG--ACGag -5'
29471 5' -58.2 NC_006151.1 + 72630 0.67 0.727788
Target:  5'- -cCGGCGG-UCCcgcGGUCC-CGCgGCUCa -3'
miRNA:   3'- acGCCGUCuAGG---UCAGGuGCGaCGAG- -5'
29471 5' -58.2 NC_006151.1 + 69991 0.67 0.727788
Target:  5'- gGCGGCAGcgUCAG--CACGCU-CUCg -3'
miRNA:   3'- aCGCCGUCuaGGUCagGUGCGAcGAG- -5'
29471 5' -58.2 NC_006151.1 + 120847 0.67 0.717868
Target:  5'- cGUGGguGGccacguacacgUCCAG-CCAC-CUGCUCc -3'
miRNA:   3'- aCGCCguCU-----------AGGUCaGGUGcGACGAG- -5'
29471 5' -58.2 NC_006151.1 + 13112 0.67 0.717868
Target:  5'- cGCGGCGGGUCa----CGCGC-GCUCc -3'
miRNA:   3'- aCGCCGUCUAGgucagGUGCGaCGAG- -5'
29471 5' -58.2 NC_006151.1 + 73461 0.67 0.707874
Target:  5'- aGCuGCAGGUgCAGcCCGcCGCcGCUCu -3'
miRNA:   3'- aCGcCGUCUAgGUCaGGU-GCGaCGAG- -5'
29471 5' -58.2 NC_006151.1 + 67985 0.67 0.707874
Target:  5'- cGCGGCGGcccgCCGGcgCCGCgGCcacggGCUCg -3'
miRNA:   3'- aCGCCGUCua--GGUCa-GGUG-CGa----CGAG- -5'
29471 5' -58.2 NC_006151.1 + 89898 0.67 0.697816
Target:  5'- gGCGGUGGggUCGGcguccgcguucUCCACGCUGUa- -3'
miRNA:   3'- aCGCCGUCuaGGUC-----------AGGUGCGACGag -5'
29471 5' -58.2 NC_006151.1 + 132470 0.68 0.677541
Target:  5'- cGCGGCAGuaggcGUCCAGcaggCGCGCguagcGCUCc -3'
miRNA:   3'- aCGCCGUC-----UAGGUCag--GUGCGa----CGAG- -5'
29471 5' -58.2 NC_006151.1 + 2386 0.68 0.667344
Target:  5'- gGcCGGCAGGcccUCgGGgCCGCGgaGCUCg -3'
miRNA:   3'- aC-GCCGUCU---AGgUCaGGUGCgaCGAG- -5'
29471 5' -58.2 NC_006151.1 + 4282 0.68 0.657117
Target:  5'- cGCGGCAGG-CCAggacgcaggcGUCCGC-CaGCUCg -3'
miRNA:   3'- aCGCCGUCUaGGU----------CAGGUGcGaCGAG- -5'
29471 5' -58.2 NC_006151.1 + 49213 0.68 0.646871
Target:  5'- gUGCGGCgcgGGGUCCccGGcucCCACGCcccGCUCg -3'
miRNA:   3'- -ACGCCG---UCUAGG--UCa--GGUGCGa--CGAG- -5'
29471 5' -58.2 NC_006151.1 + 85156 0.68 0.646871
Target:  5'- gUGCGGCAGGgggCCGGcgCCGCGg-GCg- -3'
miRNA:   3'- -ACGCCGUCUa--GGUCa-GGUGCgaCGag -5'
29471 5' -58.2 NC_006151.1 + 51967 0.68 0.645846
Target:  5'- cGCGGCGuGUCCAGcgaggcgagcagcUCCGCGgUGC-Cg -3'
miRNA:   3'- aCGCCGUcUAGGUC-------------AGGUGCgACGaG- -5'
29471 5' -58.2 NC_006151.1 + 11078 0.69 0.626351
Target:  5'- gUGCGGCGGAccgugCCaAGUUUaggGCGCUGCg- -3'
miRNA:   3'- -ACGCCGUCUa----GG-UCAGG---UGCGACGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.