miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29472 3' -55.3 NC_006151.1 + 66532 0.66 0.922381
Target:  5'- cGCGCCGCGcucuucGGGGGCgcgcgcGGCCg- -3'
miRNA:   3'- -CGCGGCGCcu----CCUCCGauua--UUGGac -5'
29472 3' -55.3 NC_006151.1 + 64957 0.66 0.922381
Target:  5'- cGCGCUGCGGGcGcAGGCcGAgcGCCa- -3'
miRNA:   3'- -CGCGGCGCCUcC-UCCGaUUauUGGac -5'
29472 3' -55.3 NC_006151.1 + 109997 0.66 0.922381
Target:  5'- aGC-CCGCcGAGGAGGCgcccGAgCUGg -3'
miRNA:   3'- -CGcGGCGcCUCCUCCGauuaUUgGAC- -5'
29472 3' -55.3 NC_006151.1 + 98266 0.66 0.922381
Target:  5'- uGCGCgCGCucGAGGAGGCc---GACCa- -3'
miRNA:   3'- -CGCG-GCGc-CUCCUCCGauuaUUGGac -5'
29472 3' -55.3 NC_006151.1 + 85171 0.66 0.916098
Target:  5'- gGCGCCGCGGGcGccgccgccccgcuGGGCaucgcgGACCUGc -3'
miRNA:   3'- -CGCGGCGCCUcC-------------UCCGauua--UUGGAC- -5'
29472 3' -55.3 NC_006151.1 + 30749 0.66 0.916682
Target:  5'- aGUGCCGCGGGcGGGGCggg-GGCa-- -3'
miRNA:   3'- -CGCGGCGCCUcCUCCGauuaUUGgac -5'
29472 3' -55.3 NC_006151.1 + 64531 0.66 0.916682
Target:  5'- cCGCCGCGGccgcgucGGGGGCggcgaGGCCg- -3'
miRNA:   3'- cGCGGCGCCu------CCUCCGauua-UUGGac -5'
29472 3' -55.3 NC_006151.1 + 100228 0.66 0.916682
Target:  5'- gGCGCCGUGGccGAGcGCgUGGUGGCgCUc -3'
miRNA:   3'- -CGCGGCGCCucCUC-CG-AUUAUUG-GAc -5'
29472 3' -55.3 NC_006151.1 + 29433 0.66 0.922381
Target:  5'- -gGCCGCGGGGGGcGGCgggGAgagggGACg-- -3'
miRNA:   3'- cgCGGCGCCUCCU-CCGa--UUa----UUGgac -5'
29472 3' -55.3 NC_006151.1 + 99236 0.67 0.870119
Target:  5'- cCGCUGCaGGucguGGAGGCgcucGUGACCg- -3'
miRNA:   3'- cGCGGCG-CCu---CCUCCGau--UAUUGGac -5'
29472 3' -55.3 NC_006151.1 + 5851 0.67 0.877462
Target:  5'- -gGCUGCGGAGGGGGacGAgcGCCc- -3'
miRNA:   3'- cgCGGCGCCUCCUCCgaUUauUGGac -5'
29472 3' -55.3 NC_006151.1 + 95524 0.67 0.877462
Target:  5'- gGCGCUGCGGAcgaugaGGAaGGCc-AUGuCCUGg -3'
miRNA:   3'- -CGCGGCGCCU------CCU-CCGauUAUuGGAC- -5'
29472 3' -55.3 NC_006151.1 + 82678 0.67 0.877462
Target:  5'- cGCGCCGCGGGcGAgGGCggc-GGCCc- -3'
miRNA:   3'- -CGCGGCGCCUcCU-CCGauuaUUGGac -5'
29472 3' -55.3 NC_006151.1 + 140205 0.67 0.877462
Target:  5'- gGCcaCCGCGGGGGcGGuGCUGcagAACCUGc -3'
miRNA:   3'- -CGc-GGCGCCUCC-UC-CGAUua-UUGGAC- -5'
29472 3' -55.3 NC_006151.1 + 103925 0.67 0.884582
Target:  5'- cCGCCGUGGAGGAGccgcaGCUgcagaaGAUGGCgCUc -3'
miRNA:   3'- cGCGGCGCCUCCUC-----CGA------UUAUUG-GAc -5'
29472 3' -55.3 NC_006151.1 + 120737 0.67 0.884582
Target:  5'- aGCGcCCGCGGGacccGGccGCgucAUGGCCUGg -3'
miRNA:   3'- -CGC-GGCGCCU----CCucCGau-UAUUGGAC- -5'
29472 3' -55.3 NC_006151.1 + 103678 0.67 0.884582
Target:  5'- gGCGCgCGCGGcGGGGGuGCUGcgcGCCg- -3'
miRNA:   3'- -CGCG-GCGCC-UCCUC-CGAUuauUGGac -5'
29472 3' -55.3 NC_006151.1 + 57144 0.67 0.891474
Target:  5'- uGCGCaCGCGGcGGGGGCgag-GGCg-- -3'
miRNA:   3'- -CGCG-GCGCCuCCUCCGauuaUUGgac -5'
29472 3' -55.3 NC_006151.1 + 121271 0.67 0.891474
Target:  5'- cGCGCUgGCGGAGaucaacGGGCgcGUGGCCg- -3'
miRNA:   3'- -CGCGG-CGCCUCc-----UCCGauUAUUGGac -5'
29472 3' -55.3 NC_006151.1 + 46013 0.67 0.870119
Target:  5'- cGC-CCGUGGAGGGGGCgacgGAUgucGACg-- -3'
miRNA:   3'- -CGcGGCGCCUCCUCCGa---UUA---UUGgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.