miRNA display CGI


Results 21 - 40 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29472 3' -55.3 NC_006151.1 + 81390 0.66 0.90073
Target:  5'- cGCGCCGCGGcgcccagguuggccaGGGuGGCguccccGCCg- -3'
miRNA:   3'- -CGCGGCGCC---------------UCCuCCGauuau-UGGac -5'
29472 3' -55.3 NC_006151.1 + 49175 0.66 0.898133
Target:  5'- cGCGCCGCGGGGuGcugcuGCUGAacacgacgcUGACCg- -3'
miRNA:   3'- -CGCGGCGCCUC-Cuc---CGAUU---------AUUGGac -5'
29472 3' -55.3 NC_006151.1 + 127845 0.66 0.898133
Target:  5'- gGCGUCGCggcugcgccGGAGGGGGCgccgcccGCCg- -3'
miRNA:   3'- -CGCGGCG---------CCUCCUCCGauuau--UGGac -5'
29472 3' -55.3 NC_006151.1 + 109552 0.66 0.898133
Target:  5'- gGCGCCGUGGAcGuGGCccg-AGCCg- -3'
miRNA:   3'- -CGCGGCGCCUcCuCCGauuaUUGGac -5'
29472 3' -55.3 NC_006151.1 + 29208 0.66 0.898133
Target:  5'- gGCGCgGCGGGGuGGGGaugGGUcACCg- -3'
miRNA:   3'- -CGCGgCGCCUC-CUCCga-UUAuUGGac -5'
29472 3' -55.3 NC_006151.1 + 21333 0.66 0.898133
Target:  5'- gGCGCgGCGGGGGuccgcGGCUGG-AACg-- -3'
miRNA:   3'- -CGCGgCGCCUCCu----CCGAUUaUUGgac -5'
29472 3' -55.3 NC_006151.1 + 133421 0.66 0.898133
Target:  5'- -gGCCGCGGAcgcGGGGGUcuUGGcGGCCg- -3'
miRNA:   3'- cgCGGCGCCU---CCUCCG--AUUaUUGGac -5'
29472 3' -55.3 NC_006151.1 + 46947 0.66 0.898133
Target:  5'- uCGCCGCGGAcuGGGGCgac---CCUGu -3'
miRNA:   3'- cGCGGCGCCUc-CUCCGauuauuGGAC- -5'
29472 3' -55.3 NC_006151.1 + 23426 0.66 0.898133
Target:  5'- -gGCCGUGGGGGcgauGGGUgggagGGUGGCCc- -3'
miRNA:   3'- cgCGGCGCCUCC----UCCGa----UUAUUGGac -5'
29472 3' -55.3 NC_006151.1 + 57144 0.67 0.891474
Target:  5'- uGCGCaCGCGGcGGGGGCgag-GGCg-- -3'
miRNA:   3'- -CGCG-GCGCCuCCUCCGauuaUUGgac -5'
29472 3' -55.3 NC_006151.1 + 121271 0.67 0.891474
Target:  5'- cGCGCUgGCGGAGaucaacGGGCgcGUGGCCg- -3'
miRNA:   3'- -CGCGG-CGCCUCc-----UCCGauUAUUGGac -5'
29472 3' -55.3 NC_006151.1 + 123029 0.67 0.891474
Target:  5'- aCGCCGUGGcGuGGGCg---GACCUGc -3'
miRNA:   3'- cGCGGCGCCuCcUCCGauuaUUGGAC- -5'
29472 3' -55.3 NC_006151.1 + 103678 0.67 0.884582
Target:  5'- gGCGCgCGCGGcGGGGGuGCUGcgcGCCg- -3'
miRNA:   3'- -CGCG-GCGCC-UCCUC-CGAUuauUGGac -5'
29472 3' -55.3 NC_006151.1 + 120737 0.67 0.884582
Target:  5'- aGCGcCCGCGGGacccGGccGCgucAUGGCCUGg -3'
miRNA:   3'- -CGC-GGCGCCU----CCucCGau-UAUUGGAC- -5'
29472 3' -55.3 NC_006151.1 + 103925 0.67 0.884582
Target:  5'- cCGCCGUGGAGGAGccgcaGCUgcagaaGAUGGCgCUc -3'
miRNA:   3'- cGCGGCGCCUCCUC-----CGA------UUAUUG-GAc -5'
29472 3' -55.3 NC_006151.1 + 5851 0.67 0.877462
Target:  5'- -gGCUGCGGAGGGGGacGAgcGCCc- -3'
miRNA:   3'- cgCGGCGCCUCCUCCgaUUauUGGac -5'
29472 3' -55.3 NC_006151.1 + 95524 0.67 0.877462
Target:  5'- gGCGCUGCGGAcgaugaGGAaGGCc-AUGuCCUGg -3'
miRNA:   3'- -CGCGGCGCCU------CCU-CCGauUAUuGGAC- -5'
29472 3' -55.3 NC_006151.1 + 82678 0.67 0.877462
Target:  5'- cGCGCCGCGGGcGAgGGCggc-GGCCc- -3'
miRNA:   3'- -CGCGGCGCCUcCU-CCGauuaUUGGac -5'
29472 3' -55.3 NC_006151.1 + 140205 0.67 0.877462
Target:  5'- gGCcaCCGCGGGGGcGGuGCUGcagAACCUGc -3'
miRNA:   3'- -CGc-GGCGCCUCC-UC-CGAUua-UUGGAC- -5'
29472 3' -55.3 NC_006151.1 + 46013 0.67 0.870119
Target:  5'- cGC-CCGUGGAGGGGGCgacgGAUgucGACg-- -3'
miRNA:   3'- -CGcGGCGCCUCCUCCGa---UUA---UUGgac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.