miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29472 5' -59.9 NC_006151.1 + 5343 0.66 0.745254
Target:  5'- gGCGGAgggcgcCCUC-UCCGgCgCgGCGCCGg -3'
miRNA:   3'- gCGCCUa-----GGAGuAGGUgG-GgUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 13043 0.66 0.745254
Target:  5'- gGCGGugaCC-CAUCCccACCCCgccGCGCCc -3'
miRNA:   3'- gCGCCua-GGaGUAGG--UGGGG---UGCGGc -5'
29472 5' -59.9 NC_006151.1 + 14082 0.66 0.745254
Target:  5'- cCGaCGGca-CUCG-CCGCCCCaacgACGCCGa -3'
miRNA:   3'- -GC-GCCuagGAGUaGGUGGGG----UGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 67939 0.66 0.745254
Target:  5'- aCGCGG--CCgcgCGcCCACCaCGCGCCGg -3'
miRNA:   3'- -GCGCCuaGGa--GUaGGUGGgGUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 78484 0.66 0.745254
Target:  5'- uGCGGAUgCUCGUgaacgCCGCCguggugCACGCCc -3'
miRNA:   3'- gCGCCUAgGAGUA-----GGUGGg-----GUGCGGc -5'
29472 5' -59.9 NC_006151.1 + 88945 0.66 0.745254
Target:  5'- aGCGGA-CCUCgaagGUCUcCCCgGCGCgCGg -3'
miRNA:   3'- gCGCCUaGGAG----UAGGuGGGgUGCG-GC- -5'
29472 5' -59.9 NC_006151.1 + 107026 0.66 0.745254
Target:  5'- gCGCuGAUCg-CGgcgCgGCCCCugGCCGg -3'
miRNA:   3'- -GCGcCUAGgaGUa--GgUGGGGugCGGC- -5'
29472 5' -59.9 NC_006151.1 + 122619 0.66 0.745254
Target:  5'- uGCGGGcCCUCGaCCugUUCACGCa- -3'
miRNA:   3'- gCGCCUaGGAGUaGGugGGGUGCGgc -5'
29472 5' -59.9 NC_006151.1 + 16956 0.66 0.744314
Target:  5'- uGCaGGG-CCUCGUCCACUCgCcggcgugGCGCCa -3'
miRNA:   3'- gCG-CCUaGGAGUAGGUGGG-G-------UGCGGc -5'
29472 5' -59.9 NC_006151.1 + 139608 0.66 0.735817
Target:  5'- gGCGGcccGUCCgggcgCGgcugggggCCAUCCgGCGCCGg -3'
miRNA:   3'- gCGCC---UAGGa----GUa-------GGUGGGgUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 2114 0.66 0.735817
Target:  5'- cCGCGGggCCggccgUcgCCGCCgCggACGCCGa -3'
miRNA:   3'- -GCGCCuaGGa----GuaGGUGGgG--UGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 12282 0.66 0.735817
Target:  5'- cCGCGGG-CC-CAUUCACCau-CGCCGc -3'
miRNA:   3'- -GCGCCUaGGaGUAGGUGGgguGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 126175 0.66 0.735817
Target:  5'- uCGCGGccuUCCUggccuaccggcaCAUCuCGCgCCUGCGCCGc -3'
miRNA:   3'- -GCGCCu--AGGA------------GUAG-GUG-GGGUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 31785 0.66 0.726295
Target:  5'- gGCGGcucUCCUCcUUCACCgC-CGCCGc -3'
miRNA:   3'- gCGCCu--AGGAGuAGGUGGgGuGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 721 0.66 0.726295
Target:  5'- cCGgGGGUCCgCGggcgggggcuUCCGCUCCGCGgCGc -3'
miRNA:   3'- -GCgCCUAGGaGU----------AGGUGGGGUGCgGC- -5'
29472 5' -59.9 NC_006151.1 + 24295 0.67 0.716698
Target:  5'- gGCGGGaacUCCUCgggGUgCACCCCgaggGCGCgGa -3'
miRNA:   3'- gCGCCU---AGGAG---UAgGUGGGG----UGCGgC- -5'
29472 5' -59.9 NC_006151.1 + 104607 0.67 0.716698
Target:  5'- cCGCGGcgCCgagAUCUGCCgCGCGCuCGa -3'
miRNA:   3'- -GCGCCuaGGag-UAGGUGGgGUGCG-GC- -5'
29472 5' -59.9 NC_006151.1 + 92265 0.67 0.715734
Target:  5'- uGCGucaaCCUCAUCCGCCacaugggCUACGCCu -3'
miRNA:   3'- gCGCcua-GGAGUAGGUGG-------GGUGCGGc -5'
29472 5' -59.9 NC_006151.1 + 105301 0.67 0.71477
Target:  5'- gCGcCGGcgCCUCcgaggacgaggCC-CCCCugGCCGa -3'
miRNA:   3'- -GC-GCCuaGGAGua---------GGuGGGGugCGGC- -5'
29472 5' -59.9 NC_006151.1 + 39296 0.67 0.707032
Target:  5'- gCGCGGGaCCUCGgcUUCG-CCgGCGCCGu -3'
miRNA:   3'- -GCGCCUaGGAGU--AGGUgGGgUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.