miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29473 3' -56.3 NC_006151.1 + 125256 0.66 0.904423
Target:  5'- cCCGGCGG-GGACGcccgagccgcCGGCCGUcaacggcacgGGGCAc -3'
miRNA:   3'- -GGUCGUCaUCUGCu---------GCCGGCA----------CUCGU- -5'
29473 3' -56.3 NC_006151.1 + 49631 0.66 0.904423
Target:  5'- --cGCgAGUGGGgGugGGCCGUGgAGgAg -3'
miRNA:   3'- gguCG-UCAUCUgCugCCGGCAC-UCgU- -5'
29473 3' -56.3 NC_006151.1 + 53966 0.66 0.904423
Target:  5'- gCCAGCGGc-GGCGGCGccuCCGcGGGCGu -3'
miRNA:   3'- -GGUCGUCauCUGCUGCc--GGCaCUCGU- -5'
29473 3' -56.3 NC_006151.1 + 40132 0.66 0.904423
Target:  5'- gUCGGCGuccgcGgcGGCGACGGCCGgccccGCGg -3'
miRNA:   3'- -GGUCGU-----CauCUGCUGCCGGCacu--CGU- -5'
29473 3' -56.3 NC_006151.1 + 62101 0.66 0.904423
Target:  5'- gUCGGCc-UGGGCG-CGGCCGUGgucgGGCu -3'
miRNA:   3'- -GGUCGucAUCUGCuGCCGGCAC----UCGu -5'
29473 3' -56.3 NC_006151.1 + 65529 0.66 0.904423
Target:  5'- gCCAGCAGcgucauGACGGCcucguGGCCGaagccggcgcgGAGCGu -3'
miRNA:   3'- -GGUCGUCau----CUGCUG-----CCGGCa----------CUCGU- -5'
29473 3' -56.3 NC_006151.1 + 115179 0.66 0.904423
Target:  5'- gCGGCAGgGGGCGcuccagccaGCGcGCCGcGGGCGc -3'
miRNA:   3'- gGUCGUCaUCUGC---------UGC-CGGCaCUCGU- -5'
29473 3' -56.3 NC_006151.1 + 111327 0.66 0.904423
Target:  5'- cCCGGgcaCGGgcgAGAUGACGGUCGggcggaUGGGCGc -3'
miRNA:   3'- -GGUC---GUCa--UCUGCUGCCGGC------ACUCGU- -5'
29473 3' -56.3 NC_006151.1 + 4862 0.66 0.904423
Target:  5'- cCCGGCGccgccGUagcGGACG-CGGCCGUcGGCc -3'
miRNA:   3'- -GGUCGU-----CA---UCUGCuGCCGGCAcUCGu -5'
29473 3' -56.3 NC_006151.1 + 72609 0.66 0.898078
Target:  5'- -gGGCAGggcggAGACGACGGuCCGgcgGucccGCGg -3'
miRNA:   3'- ggUCGUCa----UCUGCUGCC-GGCa--Cu---CGU- -5'
29473 3' -56.3 NC_006151.1 + 101442 0.66 0.898078
Target:  5'- gCUGGUcGUGGuCGGC-GCCGUGGGCc -3'
miRNA:   3'- -GGUCGuCAUCuGCUGcCGGCACUCGu -5'
29473 3' -56.3 NC_006151.1 + 47596 0.66 0.898078
Target:  5'- aCuGCAGUAcGCGGCGGCCGcagGAa-- -3'
miRNA:   3'- gGuCGUCAUcUGCUGCCGGCa--CUcgu -5'
29473 3' -56.3 NC_006151.1 + 96718 0.66 0.898078
Target:  5'- gCGGCGGcGGACGAggaGGCgGcGGGCGc -3'
miRNA:   3'- gGUCGUCaUCUGCUg--CCGgCaCUCGU- -5'
29473 3' -56.3 NC_006151.1 + 22071 0.66 0.898078
Target:  5'- aCCAGgcCAcGUGGGCG-CGGUaCGUGGGCc -3'
miRNA:   3'- -GGUC--GU-CAUCUGCuGCCG-GCACUCGu -5'
29473 3' -56.3 NC_006151.1 + 66458 0.66 0.891503
Target:  5'- aCCAGaCGGUGGuccCGGCGGUCGgcacgcuGCAc -3'
miRNA:   3'- -GGUC-GUCAUCu--GCUGCCGGCacu----CGU- -5'
29473 3' -56.3 NC_006151.1 + 26924 0.66 0.891503
Target:  5'- aCCGGCGGggagaGGACGcGCGGUCGUaGAcgucGCGc -3'
miRNA:   3'- -GGUCGUCa----UCUGC-UGCCGGCA-CU----CGU- -5'
29473 3' -56.3 NC_006151.1 + 24890 0.66 0.891503
Target:  5'- gCCGGCGGgccacgaAGACG-CGGCCcuccGAGCc -3'
miRNA:   3'- -GGUCGUCa------UCUGCuGCCGGca--CUCGu -5'
29473 3' -56.3 NC_006151.1 + 121319 0.66 0.891503
Target:  5'- -gAGC-GUGGA-GGCGGCCGccGAGCu -3'
miRNA:   3'- ggUCGuCAUCUgCUGCCGGCa-CUCGu -5'
29473 3' -56.3 NC_006151.1 + 81677 0.66 0.891503
Target:  5'- gCGGCGGUAcgccucGGCGACGGUCGcccGCGc -3'
miRNA:   3'- gGUCGUCAU------CUGCUGCCGGCacuCGU- -5'
29473 3' -56.3 NC_006151.1 + 54089 0.66 0.891503
Target:  5'- gCGGCGGc-GGCGGCGGCCaUGucGGCu -3'
miRNA:   3'- gGUCGUCauCUGCUGCCGGcAC--UCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.