miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29473 5' -59.4 NC_006151.1 + 64117 0.65 0.761213
Target:  5'- cGUGGCCCGGCgguggcgcgcccguCUCGUCGAagGUGAa -3'
miRNA:   3'- uCGUCGGGCCG--------------GAGCAGCUagUGCUa -5'
29473 5' -59.4 NC_006151.1 + 118450 0.66 0.754607
Target:  5'- cGCGGCUCGGCCUgGccgCGGaCGCGc- -3'
miRNA:   3'- uCGUCGGGCCGGAgCa--GCUaGUGCua -5'
29473 5' -59.4 NC_006151.1 + 97288 0.66 0.754607
Target:  5'- cGGCGGCgggcguguugagCCGGCC-CGUCGGgcagCGCGc- -3'
miRNA:   3'- -UCGUCG------------GGCCGGaGCAGCUa---GUGCua -5'
29473 5' -59.4 NC_006151.1 + 55211 0.66 0.754607
Target:  5'- cGCAGCCgGGCUUCGggcacCACGGc -3'
miRNA:   3'- uCGUCGGgCCGGAGCagcuaGUGCUa -5'
29473 5' -59.4 NC_006151.1 + 28511 0.66 0.745079
Target:  5'- gGGCGGUCCGGCC-CG-CGGg-ACGGg -3'
miRNA:   3'- -UCGUCGGGCCGGaGCaGCUagUGCUa -5'
29473 5' -59.4 NC_006151.1 + 28792 0.66 0.745079
Target:  5'- gGGCGGUCCGGCC-CG-CGGg-ACGGg -3'
miRNA:   3'- -UCGUCGGGCCGGaGCaGCUagUGCUa -5'
29473 5' -59.4 NC_006151.1 + 57239 0.66 0.745079
Target:  5'- cGGCGcGCgCGGCCUCGgCGuccgCGCGGc -3'
miRNA:   3'- -UCGU-CGgGCCGGAGCaGCua--GUGCUa -5'
29473 5' -59.4 NC_006151.1 + 87100 0.66 0.745079
Target:  5'- cGCcGCCgUGGUCUCGUCGcuccagCGCGAg -3'
miRNA:   3'- uCGuCGG-GCCGGAGCAGCua----GUGCUa -5'
29473 5' -59.4 NC_006151.1 + 68035 0.66 0.745079
Target:  5'- aGGCGGCCC-GCCggcgCGgCGggCACGGg -3'
miRNA:   3'- -UCGUCGGGcCGGa---GCaGCuaGUGCUa -5'
29473 5' -59.4 NC_006151.1 + 141429 0.66 0.744121
Target:  5'- cGCGGCCCGGCgCgaacgaCGUCcccguaggagggcGGUCugGAg -3'
miRNA:   3'- uCGUCGGGCCG-Ga-----GCAG-------------CUAGugCUa -5'
29473 5' -59.4 NC_006151.1 + 95754 0.66 0.735456
Target:  5'- cGCAGCggaGGCuCUCGUCGGcgGCGAg -3'
miRNA:   3'- uCGUCGgg-CCG-GAGCAGCUagUGCUa -5'
29473 5' -59.4 NC_006151.1 + 111989 0.66 0.735456
Target:  5'- gAGCGGUgCGGCUacgaCGUCGA-CGCGGc -3'
miRNA:   3'- -UCGUCGgGCCGGa---GCAGCUaGUGCUa -5'
29473 5' -59.4 NC_006151.1 + 123930 0.66 0.735456
Target:  5'- gGGCcGCCuCGGCCUCGcCGA-CGCc-- -3'
miRNA:   3'- -UCGuCGG-GCCGGAGCaGCUaGUGcua -5'
29473 5' -59.4 NC_006151.1 + 124861 0.66 0.735456
Target:  5'- uGCAGCCUGGCCaaGU-GG-CGCGAg -3'
miRNA:   3'- uCGUCGGGCCGGagCAgCUaGUGCUa -5'
29473 5' -59.4 NC_006151.1 + 131741 0.66 0.735456
Target:  5'- uGGCgGGCCCGGgCgaggcgaccgUCG-CGGUCGCGAc -3'
miRNA:   3'- -UCG-UCGGGCCgG----------AGCaGCUAGUGCUa -5'
29473 5' -59.4 NC_006151.1 + 80694 0.66 0.735456
Target:  5'- cGCGGCCCGGCg-CGggccUCACGAc -3'
miRNA:   3'- uCGUCGGGCCGgaGCagcuAGUGCUa -5'
29473 5' -59.4 NC_006151.1 + 131109 0.66 0.725744
Target:  5'- gGGgGGCCCGGCCgCGgcgCGGgaggcCGCGGc -3'
miRNA:   3'- -UCgUCGGGCCGGaGCa--GCUa----GUGCUa -5'
29473 5' -59.4 NC_006151.1 + 112394 0.66 0.715954
Target:  5'- cGCAGCgCGGCCUCcggGAUCGCc-- -3'
miRNA:   3'- uCGUCGgGCCGGAGcagCUAGUGcua -5'
29473 5' -59.4 NC_006151.1 + 75138 0.66 0.715954
Target:  5'- cGGCGGCgCGGCCcagCG-CGGgcgCACGGg -3'
miRNA:   3'- -UCGUCGgGCCGGa--GCaGCUa--GUGCUa -5'
29473 5' -59.4 NC_006151.1 + 66570 0.66 0.715954
Target:  5'- cGUGGaCCCGGCgCUCG-CGcgCGCGGc -3'
miRNA:   3'- uCGUC-GGGCCG-GAGCaGCuaGUGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.