miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29474 3' -63.3 NC_006151.1 + 51790 1.08 0.000629
Target:  5'- gGCCACCCGCUCCAGGCUCAGGCCCUGc -3'
miRNA:   3'- -CGGUGGGCGAGGUCCGAGUCCGGGAC- -5'
29474 3' -63.3 NC_006151.1 + 73203 0.81 0.061398
Target:  5'- uGCUGCCCGCgggCCAGGCccgCGGGCaCCUGg -3'
miRNA:   3'- -CGGUGGGCGa--GGUCCGa--GUCCG-GGAC- -5'
29474 3' -63.3 NC_006151.1 + 22557 0.79 0.081371
Target:  5'- gGCCACguggcgguagccgUCGUUCCGGGCcCGGGCCCUGa -3'
miRNA:   3'- -CGGUG-------------GGCGAGGUCCGaGUCCGGGAC- -5'
29474 3' -63.3 NC_006151.1 + 31205 0.78 0.090387
Target:  5'- uGUgGCCCGCgUCCAGGC-CGGGCCCc- -3'
miRNA:   3'- -CGgUGGGCG-AGGUCCGaGUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 14625 0.78 0.097576
Target:  5'- aGCCACCCccacccgucgggGCggCCGGGCUCGGGUCCg- -3'
miRNA:   3'- -CGGUGGG------------CGa-GGUCCGAGUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 35853 0.78 0.105304
Target:  5'- cGCCGCCCGCUCUccgcGCUCGGcGCCCg- -3'
miRNA:   3'- -CGGUGGGCGAGGuc--CGAGUC-CGGGac -5'
29474 3' -63.3 NC_006151.1 + 120341 0.77 0.119473
Target:  5'- cGCgCGCCCGCguggCCGGGCUCgcGGGCgCCUa -3'
miRNA:   3'- -CG-GUGGGCGa---GGUCCGAG--UCCG-GGAc -5'
29474 3' -63.3 NC_006151.1 + 118372 0.76 0.138811
Target:  5'- cGCgCGCCCGCUUCGGGUUCucGGCCUa- -3'
miRNA:   3'- -CG-GUGGGCGAGGUCCGAGu-CCGGGac -5'
29474 3' -63.3 NC_006151.1 + 110148 0.75 0.149524
Target:  5'- cGCCACCgGaCUCgGGGCcCuGGCCCUGc -3'
miRNA:   3'- -CGGUGGgC-GAGgUCCGaGuCCGGGAC- -5'
29474 3' -63.3 NC_006151.1 + 84531 0.74 0.173229
Target:  5'- cGCC-CCCGUUCCccguGGGCUUcuGGGCCCg- -3'
miRNA:   3'- -CGGuGGGCGAGG----UCCGAG--UCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 87546 0.74 0.181848
Target:  5'- aGCCGCCCG-UCCAGGCcUCGgucucGGCCCc- -3'
miRNA:   3'- -CGGUGGGCgAGGUCCG-AGU-----CCGGGac -5'
29474 3' -63.3 NC_006151.1 + 61661 0.74 0.195487
Target:  5'- cGCCAgCCGCUCguGGCcCccGCCCUGu -3'
miRNA:   3'- -CGGUgGGCGAGguCCGaGucCGGGAC- -5'
29474 3' -63.3 NC_006151.1 + 38776 0.73 0.220206
Target:  5'- aCgACCgGCUCCGGcgcccGCUCGGGCCCa- -3'
miRNA:   3'- cGgUGGgCGAGGUC-----CGAGUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 118722 0.72 0.241858
Target:  5'- uGCCGCCUGCUgCAcGGCUacgugcuGGGCCCg- -3'
miRNA:   3'- -CGGUGGGCGAgGU-CCGAg------UCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 5752 0.72 0.246968
Target:  5'- cGCCGCCgGC-CCGGGCUCaccgaccGGGUCCc- -3'
miRNA:   3'- -CGGUGGgCGaGGUCCGAG-------UCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 38043 0.72 0.247541
Target:  5'- cCCGCCCGCgccCCGGccgccCUCGGGCCCg- -3'
miRNA:   3'- cGGUGGGCGa--GGUCc----GAGUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 117649 0.72 0.247541
Target:  5'- cGCCGCgCUGCUCCgGGGCgucCAGGCaCCg- -3'
miRNA:   3'- -CGGUG-GGCGAGG-UCCGa--GUCCG-GGac -5'
29474 3' -63.3 NC_006151.1 + 39726 0.72 0.247541
Target:  5'- cCCGCCagCGCUCCGcGCUCGGGCUCg- -3'
miRNA:   3'- cGGUGG--GCGAGGUcCGAGUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 64189 0.72 0.265254
Target:  5'- cGCCGCCCGCgaucgccCCGGGC--AGGUCCg- -3'
miRNA:   3'- -CGGUGGGCGa------GGUCCGagUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 37464 0.71 0.271383
Target:  5'- cGCgGCCCGCUaCCGcgccgcGGC-CGGGCCCg- -3'
miRNA:   3'- -CGgUGGGCGA-GGU------CCGaGUCCGGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.