miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29474 3' -63.3 NC_006151.1 + 4124 0.67 0.470457
Target:  5'- gGCCugCCGCcgcucggCCGGGC-C-GGCCCc- -3'
miRNA:   3'- -CGGugGGCGa------GGUCCGaGuCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 4187 0.7 0.324535
Target:  5'- cGUCACCUcCUCgAGGCaggCGGGCCCg- -3'
miRNA:   3'- -CGGUGGGcGAGgUCCGa--GUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 5752 0.72 0.246968
Target:  5'- cGCCGCCgGC-CCGGGCUCaccgaccGGGUCCc- -3'
miRNA:   3'- -CGGUGGgCGaGGUCCGAG-------UCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 9388 0.66 0.545174
Target:  5'- gGCCcCCCGCg-CGGG-UCGGGCCUUc -3'
miRNA:   3'- -CGGuGGGCGagGUCCgAGUCCGGGAc -5'
29474 3' -63.3 NC_006151.1 + 10905 0.7 0.310555
Target:  5'- uGCCGgCgCGgaCCGGGgUCGGGCCCa- -3'
miRNA:   3'- -CGGUgG-GCgaGGUCCgAGUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 11018 0.68 0.426489
Target:  5'- cCCGCCCGCUcgcucgCCGGGC-CggccggccggGGGCCCg- -3'
miRNA:   3'- cGGUGGGCGA------GGUCCGaG----------UCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 13464 0.68 0.443788
Target:  5'- cGCCcguCCCGCgggCCGGaccgccccgccGaCUCGGGUCCUGg -3'
miRNA:   3'- -CGGu--GGGCGa--GGUC-----------C-GAGUCCGGGAC- -5'
29474 3' -63.3 NC_006151.1 + 14625 0.78 0.097576
Target:  5'- aGCCACCCccacccgucgggGCggCCGGGCUCGGGUCCg- -3'
miRNA:   3'- -CGGUGGG------------CGa-GGUCCGAGUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 14893 0.7 0.310555
Target:  5'- cGCCcgucgACCCGC-CCGGGCcCcGGCCCa- -3'
miRNA:   3'- -CGG-----UGGGCGaGGUCCGaGuCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 15883 0.66 0.525125
Target:  5'- cGCCGCCCGC-CgGGGgaCGcgcgccccgacgcGGCCCg- -3'
miRNA:   3'- -CGGUGGGCGaGgUCCgaGU-------------CCGGGac -5'
29474 3' -63.3 NC_006151.1 + 18361 0.66 0.535594
Target:  5'- uGCUgaACUCGUccucggcgUCCAGGCUCAcguacGGCCCc- -3'
miRNA:   3'- -CGG--UGGGCG--------AGGUCCGAGU-----CCGGGac -5'
29474 3' -63.3 NC_006151.1 + 19488 0.7 0.309868
Target:  5'- cGCCGaugcCCCGCUCCGGGgcCUCGgggacgcaggcgcGGCCCa- -3'
miRNA:   3'- -CGGU----GGGCGAGGUCC--GAGU-------------CCGGGac -5'
29474 3' -63.3 NC_006151.1 + 22557 0.79 0.081371
Target:  5'- gGCCACguggcgguagccgUCGUUCCGGGCcCGGGCCCUGa -3'
miRNA:   3'- -CGGUG-------------GGCGAGGUCCGaGUCCGGGAC- -5'
29474 3' -63.3 NC_006151.1 + 31205 0.78 0.090387
Target:  5'- uGUgGCCCGCgUCCAGGC-CGGGCCCc- -3'
miRNA:   3'- -CGgUGGGCG-AGGUCCGaGUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 35853 0.78 0.105304
Target:  5'- cGCCGCCCGCUCUccgcGCUCGGcGCCCg- -3'
miRNA:   3'- -CGGUGGGCGAGGuc--CGAGUC-CGGGac -5'
29474 3' -63.3 NC_006151.1 + 36607 0.69 0.385055
Target:  5'- aGCCuccCCCGCcgCCGGGCcggucUCGGcGCCCg- -3'
miRNA:   3'- -CGGu--GGGCGa-GGUCCG-----AGUC-CGGGac -5'
29474 3' -63.3 NC_006151.1 + 37464 0.71 0.271383
Target:  5'- cGCgGCCCGCUaCCGcgccgcGGC-CGGGCCCg- -3'
miRNA:   3'- -CGgUGGGCGA-GGU------CCGaGUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 37725 0.71 0.283981
Target:  5'- cGCCAUggCCGC-CCAGgacccGCUCuGGGCCCUGc -3'
miRNA:   3'- -CGGUG--GGCGaGGUC-----CGAG-UCCGGGAC- -5'
29474 3' -63.3 NC_006151.1 + 38017 0.67 0.488683
Target:  5'- uGCCcuGCCCGCUCC-GGCU---GCCCg- -3'
miRNA:   3'- -CGG--UGGGCGAGGuCCGAgucCGGGac -5'
29474 3' -63.3 NC_006151.1 + 38043 0.72 0.247541
Target:  5'- cCCGCCCGCgccCCGGccgccCUCGGGCCCg- -3'
miRNA:   3'- cGGUGGGCGa--GGUCc----GAGUCCGGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.