miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29474 3' -63.3 NC_006151.1 + 15883 0.66 0.525125
Target:  5'- cGCCGCCCGC-CgGGGgaCGcgcgccccgacgcGGCCCg- -3'
miRNA:   3'- -CGGUGGGCGaGgUCCgaGU-------------CCGGGac -5'
29474 3' -63.3 NC_006151.1 + 84959 0.66 0.516618
Target:  5'- -aCGCCaCGCUCCAGGC-CAcGCUCg- -3'
miRNA:   3'- cgGUGG-GCGAGGUCCGaGUcCGGGac -5'
29474 3' -63.3 NC_006151.1 + 98343 0.66 0.516618
Target:  5'- gGCCGCgagaCGCcCgCGGGCgugcgCGGGCUCUGg -3'
miRNA:   3'- -CGGUGg---GCGaG-GUCCGa----GUCCGGGAC- -5'
29474 3' -63.3 NC_006151.1 + 77892 0.67 0.507232
Target:  5'- cGCCcCCCGCUCagcGGCgagaCGcGGCCCa- -3'
miRNA:   3'- -CGGuGGGCGAGgu-CCGa---GU-CCGGGac -5'
29474 3' -63.3 NC_006151.1 + 47072 0.67 0.507232
Target:  5'- cCCGguCCUGCUCC-GGCUCccGGCCCc- -3'
miRNA:   3'- cGGU--GGGCGAGGuCCGAGu-CCGGGac -5'
29474 3' -63.3 NC_006151.1 + 82699 0.67 0.507232
Target:  5'- gGCC-CCCGCgagggCCAGG---AGGCCCg- -3'
miRNA:   3'- -CGGuGGGCGa----GGUCCgagUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 99886 0.67 0.497919
Target:  5'- cGCCGCgCGgaCCuGGCgCAGGUgCUGa -3'
miRNA:   3'- -CGGUGgGCgaGGuCCGaGUCCGgGAC- -5'
29474 3' -63.3 NC_006151.1 + 96579 0.67 0.497919
Target:  5'- cGCCGCCuCGCggcgcgaggcgCCGGGCgCGGGCgCg- -3'
miRNA:   3'- -CGGUGG-GCGa----------GGUCCGaGUCCGgGac -5'
29474 3' -63.3 NC_006151.1 + 85060 0.67 0.488683
Target:  5'- aCCACggCGCUgCAGGCcugCGGGCgCCUGu -3'
miRNA:   3'- cGGUGg-GCGAgGUCCGa--GUCCG-GGAC- -5'
29474 3' -63.3 NC_006151.1 + 49943 0.67 0.488683
Target:  5'- uCCGCCgGgaCCuGGC-CGcGGCCCUGg -3'
miRNA:   3'- cGGUGGgCgaGGuCCGaGU-CCGGGAC- -5'
29474 3' -63.3 NC_006151.1 + 124921 0.67 0.488683
Target:  5'- uCCuuCCGCUUCAcGUcgCGGGCCCUGg -3'
miRNA:   3'- cGGugGGCGAGGUcCGa-GUCCGGGAC- -5'
29474 3' -63.3 NC_006151.1 + 38017 0.67 0.488683
Target:  5'- uGCCcuGCCCGCUCC-GGCU---GCCCg- -3'
miRNA:   3'- -CGG--UGGGCGAGGuCCGAgucCGGGac -5'
29474 3' -63.3 NC_006151.1 + 106854 0.67 0.479528
Target:  5'- -gUACUCGC-CC-GGCUCGGGCCUg- -3'
miRNA:   3'- cgGUGGGCGaGGuCCGAGUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 48269 0.67 0.479528
Target:  5'- aCCACCCGCUgCUGGGCcUCGagccGCCCg- -3'
miRNA:   3'- cGGUGGGCGA-GGUCCG-AGUc---CGGGac -5'
29474 3' -63.3 NC_006151.1 + 78122 0.67 0.479528
Target:  5'- cGCCAuCCUGCggCGGGCcgCGGGCgCCUc -3'
miRNA:   3'- -CGGU-GGGCGagGUCCGa-GUCCG-GGAc -5'
29474 3' -63.3 NC_006151.1 + 113302 0.67 0.479528
Target:  5'- cGCUACCgCGCgguggacgCCAcGCUgGGGCCCg- -3'
miRNA:   3'- -CGGUGG-GCGa-------GGUcCGAgUCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 38332 0.67 0.479528
Target:  5'- cGCCcgGCCUGC-CCccGCUCuGGCCCg- -3'
miRNA:   3'- -CGG--UGGGCGaGGucCGAGuCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 51181 0.67 0.479528
Target:  5'- uGCaggGCCCGCUCCAcgacgaggguGGCcagCAGGCCg-- -3'
miRNA:   3'- -CGg--UGGGCGAGGU----------CCGa--GUCCGGgac -5'
29474 3' -63.3 NC_006151.1 + 4124 0.67 0.470457
Target:  5'- gGCCugCCGCcgcucggCCGGGC-C-GGCCCc- -3'
miRNA:   3'- -CGGugGGCGa------GGUCCGaGuCCGGGac -5'
29474 3' -63.3 NC_006151.1 + 72632 0.67 0.470457
Target:  5'- gGCgGuCCCGCggucCCGcGGCUCAGGCgCUc -3'
miRNA:   3'- -CGgU-GGGCGa---GGU-CCGAGUCCGgGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.