miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29474 5' -55 NC_006151.1 + 74888 0.65 0.918973
Target:  5'- -cCGUGGCCGG---GGccAGCcGAUGCCg -3'
miRNA:   3'- caGUACCGGUCgaaCC--UCGaCUACGG- -5'
29474 5' -55 NC_006151.1 + 54836 0.65 0.918973
Target:  5'- cUCAcgGGCgAGCgcggGGAGUgccUGGUGCUc -3'
miRNA:   3'- cAGUa-CCGgUCGaa--CCUCG---ACUACGG- -5'
29474 5' -55 NC_006151.1 + 5016 0.65 0.918973
Target:  5'- -gCcgGGCgGGCUccGGGGCcGggGCCg -3'
miRNA:   3'- caGuaCCGgUCGAa-CCUCGaCuaCGG- -5'
29474 5' -55 NC_006151.1 + 91176 0.66 0.886793
Target:  5'- cGUCggGcGCCcGCgaggGGAGCaUGAUGCa -3'
miRNA:   3'- -CAGuaC-CGGuCGaa--CCUCG-ACUACGg -5'
29474 5' -55 NC_006151.1 + 640 0.66 0.893718
Target:  5'- -aCGUGacGCCGGCUUccGGGGC-GcgGCCg -3'
miRNA:   3'- caGUAC--CGGUCGAA--CCUCGaCuaCGG- -5'
29474 5' -55 NC_006151.1 + 28535 0.66 0.893718
Target:  5'- cGUCcgGGaCCGGCcaaUGGGGgaGccGUGCCc -3'
miRNA:   3'- -CAGuaCC-GGUCGa--ACCUCgaC--UACGG- -5'
29474 5' -55 NC_006151.1 + 90038 0.66 0.893718
Target:  5'- ----cGGCCAGCcccaGGGC-GAUGCCg -3'
miRNA:   3'- caguaCCGGUCGaac-CUCGaCUACGG- -5'
29474 5' -55 NC_006151.1 + 84243 0.66 0.906841
Target:  5'- uUCGUGGcCCAGC--GGAGCaUGcgcGUGCUc -3'
miRNA:   3'- cAGUACC-GGUCGaaCCUCG-AC---UACGG- -5'
29474 5' -55 NC_006151.1 + 85909 0.66 0.906841
Target:  5'- -cCGUGGCCGuGCaguacgaggaGGGGCUGG-GCCu -3'
miRNA:   3'- caGUACCGGU-CGaa--------CCUCGACUaCGG- -5'
29474 5' -55 NC_006151.1 + 106308 0.66 0.913032
Target:  5'- -aCAUGGCCAagacGC-UGGAcGC-GGUGCUg -3'
miRNA:   3'- caGUACCGGU----CGaACCU-CGaCUACGG- -5'
29474 5' -55 NC_006151.1 + 92214 0.66 0.913032
Target:  5'- ----cGGCCGcGC-UGGAGCacGAUGCUg -3'
miRNA:   3'- caguaCCGGU-CGaACCUCGa-CUACGG- -5'
29474 5' -55 NC_006151.1 + 74316 0.66 0.915438
Target:  5'- cGUCGUGGUgCGGgUgcaGGGGCUGGUucucguuccgcacggGCCg -3'
miRNA:   3'- -CAGUACCG-GUCgAa--CCUCGACUA---------------CGG- -5'
29474 5' -55 NC_006151.1 + 102382 0.67 0.848718
Target:  5'- -cCGUGGCCaAGC-UGGcGCUGGUcGCg -3'
miRNA:   3'- caGUACCGG-UCGaACCuCGACUA-CGg -5'
29474 5' -55 NC_006151.1 + 121294 0.67 0.856774
Target:  5'- -gCGUGGCCgaccgcgacgGGCgcUGGAGCgugGAggcgGCCg -3'
miRNA:   3'- caGUACCGG----------UCGa-ACCUCGa--CUa---CGG- -5'
29474 5' -55 NC_006151.1 + 98454 0.67 0.856774
Target:  5'- ---cUGGCCGGCcUGGcGCUGuggcGCCu -3'
miRNA:   3'- caguACCGGUCGaACCuCGACua--CGG- -5'
29474 5' -55 NC_006151.1 + 108720 0.67 0.856774
Target:  5'- aGUgGUGGCCAGCgccGAGgaGAcggugGCCc -3'
miRNA:   3'- -CAgUACCGGUCGaacCUCgaCUa----CGG- -5'
29474 5' -55 NC_006151.1 + 139615 0.67 0.856774
Target:  5'- cGUCcgGGCgCGGCUgGGGGCcauccGgcGCCg -3'
miRNA:   3'- -CAGuaCCG-GUCGAaCCUCGa----CuaCGG- -5'
29474 5' -55 NC_006151.1 + 113518 0.67 0.879631
Target:  5'- uUCGUGGCgGacgcgcGCUuccUGGcGCUGAUGCg -3'
miRNA:   3'- cAGUACCGgU------CGA---ACCuCGACUACGg -5'
29474 5' -55 NC_006151.1 + 70807 0.67 0.879631
Target:  5'- cGUCGUGGgCAGCUaccGGcgcAGCUGGaucgUGCUc -3'
miRNA:   3'- -CAGUACCgGUCGAa--CC---UCGACU----ACGG- -5'
29474 5' -55 NC_006151.1 + 48850 0.67 0.848718
Target:  5'- cUCGUGGCgCGcGCUgcUGGAGCccgaGAUcGCCa -3'
miRNA:   3'- cAGUACCG-GU-CGA--ACCUCGa---CUA-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.