Results 1 - 20 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29474 | 5' | -55 | NC_006151.1 | + | 51829 | 1.12 | 0.001629 |
Target: 5'- gGUCAUGGCCAGCUUGGAGCUGAUGCCg -3' miRNA: 3'- -CAGUACCGGUCGAACCUCGACUACGG- -5' |
|||||||
29474 | 5' | -55 | NC_006151.1 | + | 134614 | 0.8 | 0.220069 |
Target: 5'- aGUCG-GGCCAGCgcgUGGcccAGCUGGUGCUg -3' miRNA: 3'- -CAGUaCCGGUCGa--ACC---UCGACUACGG- -5' |
|||||||
29474 | 5' | -55 | NC_006151.1 | + | 3734 | 0.8 | 0.243182 |
Target: 5'- gGUCcgGGCCGGCggcgggGGAGCUGGcguaGCCg -3' miRNA: 3'- -CAGuaCCGGUCGaa----CCUCGACUa---CGG- -5' |
|||||||
29474 | 5' | -55 | NC_006151.1 | + | 120887 | 0.73 | 0.531009 |
Target: 5'- cGUCAUGGCCucgcgcccGCUggUGGuGCUGG-GCCu -3' miRNA: 3'- -CAGUACCGGu-------CGA--ACCuCGACUaCGG- -5' |
|||||||
29474 | 5' | -55 | NC_006151.1 | + | 101445 | 0.73 | 0.561727 |
Target: 5'- gGUCGUGGUCGGCgccgUGGGcCUGG-GCCu -3' miRNA: 3'- -CAGUACCGGUCGa---ACCUcGACUaCGG- -5' |
|||||||
29474 | 5' | -55 | NC_006151.1 | + | 71193 | 0.72 | 0.613857 |
Target: 5'- cGUCAUGGCCucGCa-GGAGCUcGUGUCc -3' miRNA: 3'- -CAGUACCGGu-CGaaCCUCGAcUACGG- -5' |
|||||||
29474 | 5' | -55 | NC_006151.1 | + | 55037 | 0.71 | 0.655864 |
Target: 5'- ----cGGCCGGCgccgUGGAGaaGAUGCUc -3' miRNA: 3'- caguaCCGGUCGa---ACCUCgaCUACGG- -5' |
|||||||
29474 | 5' | -55 | NC_006151.1 | + | 140200 | 0.71 | 0.655864 |
Target: 5'- aUCGUGGCCAcCgcgGGGGC-GGUGCUg -3' miRNA: 3'- cAGUACCGGUcGaa-CCUCGaCUACGG- -5' |
|||||||
29474 | 5' | -55 | NC_006151.1 | + | 62100 | 0.71 | 0.676782 |
Target: 5'- gGUCGgccugGGCgCGGCcgUGGucgGGCUGAUGCUc -3' miRNA: 3'- -CAGUa----CCG-GUCGa-ACC---UCGACUACGG- -5' |
|||||||
29474 | 5' | -55 | NC_006151.1 | + | 115008 | 0.7 | 0.697546 |
Target: 5'- -gCAUGGCCAGCUUGugguagacgguGAGgUGcgGCa -3' miRNA: 3'- caGUACCGGUCGAAC-----------CUCgACuaCGg -5' |
|||||||
29474 | 5' | -55 | NC_006151.1 | + | 74543 | 0.7 | 0.728233 |
Target: 5'- -gCGUGGUUgAGCUccuccUGGGGCUGGuUGCCc -3' miRNA: 3'- caGUACCGG-UCGA-----ACCUCGACU-ACGG- -5' |
|||||||
29474 | 5' | -55 | NC_006151.1 | + | 64754 | 0.69 | 0.758134 |
Target: 5'- -gCAgcggGGCCAccguGCgcgGGGGCUGGuUGCCg -3' miRNA: 3'- caGUa---CCGGU----CGaa-CCUCGACU-ACGG- -5' |
|||||||
29474 | 5' | -55 | NC_006151.1 | + | 3781 | 0.69 | 0.758134 |
Target: 5'- ----aGGCCGGaCUUGGuGCUGGaGCUg -3' miRNA: 3'- caguaCCGGUC-GAACCuCGACUaCGG- -5' |
|||||||
29474 | 5' | -55 | NC_006151.1 | + | 101689 | 0.69 | 0.767879 |
Target: 5'- cUCGUGGaCgAGCcguacgUGGAGCgggcGGUGCCc -3' miRNA: 3'- cAGUACC-GgUCGa-----ACCUCGa---CUACGG- -5' |
|||||||
29474 | 5' | -55 | NC_006151.1 | + | 20060 | 0.69 | 0.777497 |
Target: 5'- aUgGUGGCCAGCUucUGGcgaAGCUcg-GCCa -3' miRNA: 3'- cAgUACCGGUCGA--ACC---UCGAcuaCGG- -5' |
|||||||
29474 | 5' | -55 | NC_006151.1 | + | 71364 | 0.68 | 0.822462 |
Target: 5'- cGUCAUGGCCGugcaccugagcacGCUgcccgacGGGCUGuuUGCCu -3' miRNA: 3'- -CAGUACCGGU-------------CGAac-----CUCGACu-ACGG- -5' |
|||||||
29474 | 5' | -55 | NC_006151.1 | + | 28864 | 0.68 | 0.831992 |
Target: 5'- -cCAuUGGCCGGCgcguccccGGAgGCgGGUGCCg -3' miRNA: 3'- caGU-ACCGGUCGaa------CCU-CGaCUACGG- -5' |
|||||||
29474 | 5' | -55 | NC_006151.1 | + | 28586 | 0.68 | 0.831992 |
Target: 5'- ---uUGGCCGGCgcguccccGGAgGCgGGUGCCg -3' miRNA: 3'- caguACCGGUCGaa------CCU-CGaCUACGG- -5' |
|||||||
29474 | 5' | -55 | NC_006151.1 | + | 58846 | 0.68 | 0.831992 |
Target: 5'- --gGUGcGCCAGCgcgUGGAGCUc--GCCc -3' miRNA: 3'- cagUAC-CGGUCGa--ACCUCGAcuaCGG- -5' |
|||||||
29474 | 5' | -55 | NC_006151.1 | + | 29601 | 0.68 | 0.840455 |
Target: 5'- ----cGGCCgcGGCggcgGGGGCUGGUGUg -3' miRNA: 3'- caguaCCGG--UCGaa--CCUCGACUACGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home